View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_64 (Length: 298)
Name: NF7739_low_64
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_64 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 18096242 - 18096525
Alignment:
| Q |
15 |
aatatctattacacttagtgatgtgcttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaa |
114 |
Q |
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| T |
18096242 |
aatatttattacacttagttatgtgcttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaa |
18096341 |
T |
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| Q |
115 |
tttttctccgtgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggc |
214 |
Q |
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| T |
18096342 |
tttttctccgtgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggc |
18096441 |
T |
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| Q |
215 |
aaaagtcaatactagattaaggaacctgtttggatatactcnnnnnnncataaccacttttttggtgttaatagtaagtcctat |
298 |
Q |
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| T |
18096442 |
aaaagtcaatactagattaaggaacctgtttggatatactctttttttcataaccacttttttggtgttaatagtaagtcctat |
18096525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 37853848 - 37854131
Alignment:
| Q |
15 |
aatatctattacacttagtgatgtgcttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaa |
114 |
Q |
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| T |
37853848 |
aatatttattacacttagttatgtgcttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaa |
37853947 |
T |
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| Q |
115 |
tttttctccgtgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggc |
214 |
Q |
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| T |
37853948 |
tttttctccgtgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggc |
37854047 |
T |
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| Q |
215 |
aaaagtcaatactagattaaggaacctgtttggatatactcnnnnnnncataaccacttttttggtgttaatagtaagtcctat |
298 |
Q |
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| T |
37854048 |
aaaagtcaatactagattaaggaacctgtttggatatactctttttttcataaccacttttttggtgttaatagtaagtcctat |
37854131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 21089880 - 21090005
Alignment:
| Q |
125 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaat |
224 |
Q |
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| T |
21089880 |
tgtgcagaaataccatccttctagggtgcttaccattgtatatcagccatttgtatttgcaacacaagcaatattggcttacaatgaggccaaaatcagt |
21089979 |
T |
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| Q |
225 |
actagattaaggaacctgtttggata |
250 |
Q |
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| T |
21089980 |
acaaggatacggaacctgttcggata |
21090005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 64422 - 64357
Alignment:
| Q |
125 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacact |
190 |
Q |
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| T |
64422 |
tgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatttgcagttggaacact |
64357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 51966 - 51913
Alignment:
| Q |
125 |
tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgc |
178 |
Q |
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| T |
51966 |
tgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatttgc |
51913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 31523619 - 31523674
Alignment:
| Q |
133 |
attatcatccctccagggtgcttacacttgtataccagccatttgcagttggaaca |
188 |
Q |
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| T |
31523619 |
attatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaaca |
31523674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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