View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_low_68 (Length: 282)
Name: NF7739_low_68
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_68 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 49472877 - 49472634
Alignment:
| Q |
18 |
aagtcatacgaagacctctaggacttggcaattttgaattcttattcttgacaagatccttttttgtcctagatttctccgtttcatcaacgatttcaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49472877 |
aagtcatacgaagacctctaggacttggcaattttgaattgttattcttgacaagatccttttttgtcctagatttctccgtttcatcaacgatttcaat |
49472778 |
T |
|
| Q |
118 |
ttcctcttcctacaataataataatttcaaaatacatgaggcattcaaataacaaaagataaatcgatgaaccaagtcggtgtcgg-ggggttctcgtac |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49472777 |
ttccacttcctacaataataataatttcaaaatacatgaggcattcaaataacaaaagataaatcgatgaaccaagtcggtgtcgggggggttctcgtac |
49472678 |
T |
|
| Q |
217 |
cttagaaacattaacattgtttccctctattttgccatttgatc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49472677 |
cttagaaacattaacattgtttccctctattttgccatttgatc |
49472634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University