View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_7 (Length: 718)
Name: NF7739_low_7
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 27821389 - 27821962
Alignment:
| Q |
18 |
ttagtttcaacgtacaaatacgaaaaactatcaagcaagctgcacaatgagtcattgcaaggctgagggtaatgtggttttgttggatttttggccaagt |
117 |
Q |
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| T |
27821389 |
ttagtttcaacatacaaatacgaaaaactatcaagcaagctgcacaatgagtcattgcaaggctgagggtaatgtgattttgttggatttttggccaagt |
27821488 |
T |
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| Q |
118 |
tcatatggaatgagagtgaaaattgcattggaagagaagggagtctcatatgagtgtagacaagaagattttcaagataagagctctttgcttttagaga |
217 |
Q |
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| T |
27821489 |
tcatatggaatgagagtgaaaattgcattggaagagaagggagtctcatatgagtgtagacaagaagattttcaagataaaagctctttgcttttagaga |
27821588 |
T |
|
| Q |
218 |
tgaacccggtttacaaaatgataccggttttagttcataatggaaaacctatatgtgaatcacttaatatagttgagtacattgatgaagcttggaacca |
317 |
Q |
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| T |
27821589 |
tgaacccggtttacaaaatgataccggttttggttcataatggaaaacctatatgtgaatcacttaatatagttgagtacattgatgaagcttggaacca |
27821688 |
T |
|
| Q |
318 |
aaaaccttctcttttgccctctgacccttacaaacgatcacaagccaagttttggggagattacattgacaaacatgtaagttacttacattactatgtg |
417 |
Q |
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| T |
27821689 |
aaaaccttctcttttgccctcggacccttacaaacgatcacaagccaagttttggggagattacattgacaaacatgtaagttacttacattactatgtg |
27821788 |
T |
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| Q |
418 |
tgttattatttttggttagtcgtgctattggtgtgaagtatccagcacctttgtcagactaatttccgccggag-ttatagctagccacttttagtgggt |
516 |
Q |
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| T |
27821789 |
tgttattatttttggttagtcgtgctattggtgtgaagtatccagcacctttgtcagactaatttccgccggagattatagctagccacttttagtgggt |
27821888 |
T |
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| Q |
517 |
ttccactctcaactacattttttcgtccatattaatacttaagtagatacatatgtatgaaataacatccgttg |
590 |
Q |
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| T |
27821889 |
ttccactctcaactacattttttcgtccatattaatacttaagtagatacatatgtatgaaataacatccgttg |
27821962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 90 - 401
Target Start/End: Original strand, 27824441 - 27824752
Alignment:
| Q |
90 |
tgtggttttgttggatttttggccaagttcatatggaatgagagtgaaaattgcattggaagagaagggagtctcatatgagtgtagacaagaagatttt |
189 |
Q |
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| T |
27824441 |
tgtggttttgttggatttttggccaagcgtatatggaatgagagtgaaaattgctttggaagagaagggagtctcatatgaatgtagacaagaagatttt |
27824540 |
T |
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| Q |
190 |
caagataagagctctttgcttttagagatgaacccggtttacaaaatgataccggttttagttcataatggaaaacctatatgtgaatcacttaatatag |
289 |
Q |
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| T |
27824541 |
caagataaaagctctatgcttttagagatgaacccggtttacaaaatgataccggttttggttcataatggaaaacctatatgtgaatcacttaatatag |
27824640 |
T |
|
| Q |
290 |
ttgagtacattgatgaagcttggaaccaaaaaccttctcttttgccctctgacccttacaaacgatcacaagccaagttttggggagattacattgacaa |
389 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
27824641 |
ttgaatacattgatgaagcttggaatcacaaaccttctcttttgcccttagacccttacaagcgatcacaagctaagttttggggagattacattgacaa |
27824740 |
T |
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| Q |
390 |
acatgtaagtta |
401 |
Q |
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| T |
27824741 |
acatgtaagtta |
27824752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 639 - 711
Target Start/End: Original strand, 27822011 - 27822083
Alignment:
| Q |
639 |
gtagatttgagttcaaccataaatagtgtaccatatttggtctaacactatattatttgatctctgctactcc |
711 |
Q |
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| T |
27822011 |
gtagatttgagttcaaccataaaaagtgtaccatatttggtctaacactatattatttgatctttgttactcc |
27822083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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