View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_72 (Length: 272)
Name: NF7739_low_72
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_72 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 18341946 - 18341831
Alignment:
| Q |
1 |
agaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
100 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18341946 |
agaacggttcaaataccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
18341847 |
T |
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| Q |
101 |
acaaatactttttagt |
116 |
Q |
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|||||||||||||||| |
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| T |
18341846 |
acaaatactttttagt |
18341831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 22100912 - 22100820
Alignment:
| Q |
24 |
taatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagcaacaaatactttttagt |
116 |
Q |
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| T |
22100912 |
taatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatcgagaaaacaacaaatactttttagt |
22100820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 138411 - 138525
Alignment:
| Q |
1 |
agaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
100 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
138411 |
agaacggttcaaataccacttactaatatcaccgaaaacattgt-aaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
138509 |
T |
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| Q |
101 |
acaaatactttttagt |
116 |
Q |
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|||||||||||||||| |
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| T |
138510 |
acaaatactttttagt |
138525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 277183 - 277132
Alignment:
| Q |
25 |
aatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaa |
76 |
Q |
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| T |
277183 |
aatattaccgaaaacattgttaaaatacttctacgagagggttttcttgaaa |
277132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13168577 - 13168463
Alignment:
| Q |
1 |
agaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
100 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13168577 |
agaacggttcaaataccacttactaatatcaccgaaaacattgt-aaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagca |
13168479 |
T |
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| Q |
101 |
acaaatactttttagt |
116 |
Q |
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|||||||||||||||| |
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| T |
13168478 |
acaaatactttttagt |
13168463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 1267 - 1359
Alignment:
| Q |
21 |
tactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaagcaacaaatacttttt |
113 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||| |||||| | || ||||| || |||||| | ||| |||||||||| ||||| |
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| T |
1267 |
tactaacatcactgaaaacattgttaaaatacttttacgagaaggttttatcgataacgtaaggaaacatcgggaacgcaacaaatatttttt |
1359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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