View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_75 (Length: 264)
Name: NF7739_low_75
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_75 |
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| [»] scaffold1034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 3173563 - 3173327
Alignment:
| Q |
18 |
ctttggtaaccaatctttttctctatcaaaataatttattttaattattcatctagcaattagatacattaaagtcacgcaacaaaaaagtcatccaaat |
117 |
Q |
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| T |
3173563 |
ctttggtaaccaatctttttctctgtcaaaataatttattttaattattcatctagatattagatacactaaagtcacgcaacaaaaaagtcatccgaat |
3173464 |
T |
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| Q |
118 |
atttttctaacggtgtattggttaggtcgtgtacctatgaatcattgttacccaattcgattcttctagtgattgttctaannnnnnnaaataaatattt |
217 |
Q |
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| T |
3173463 |
atttttctaacggtgtattggttaggtagtgtacctatgaatcattgttacccaattcgattcttccagtgattgttctaatttttttaaataaatattt |
3173364 |
T |
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| Q |
218 |
attagcctgatccctgctttgtccctcccggttcatc |
254 |
Q |
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| T |
3173363 |
attagcctgatcactgctttgtccctcccggttcatc |
3173327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 7261196 - 7261243
Alignment:
| Q |
42 |
atcaaaataatttattttaattattcatctagcaattagatacattaa |
89 |
Q |
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| T |
7261196 |
atcaaaataatttattttaattatttatctatcaattaaatatattaa |
7261243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 28067332 - 28067402
Alignment:
| Q |
24 |
taaccaatctttttctct-atcaaaataatttattttaattattcatctagcaattagatacattaaagtc |
93 |
Q |
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| T |
28067332 |
taaccaatcattctctctcatcaaaataatttattttaatcattcatctgtcaattaaatacactaaagtc |
28067402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 40902348 - 40902296
Alignment:
| Q |
42 |
atcaaaataatttattttaattattcatctagcaattagatacattaaagtca |
94 |
Q |
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| T |
40902348 |
atcaatataatttattttaatcattcatctatcgattaaatacattaaagtca |
40902296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 42681891 - 42681858
Alignment:
| Q |
39 |
tctatcaaaataatttattttaattattcatcta |
72 |
Q |
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| T |
42681891 |
tctatcaaaataatttattttaattactcatcta |
42681858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1034 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1034
Description:
Target: scaffold1034; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 2752 - 2799
Alignment:
| Q |
45 |
aaaataatttattttaattattcatctagcaattagatacattaaagt |
92 |
Q |
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| T |
2752 |
aaaataatttattttaattatttatctttcaattagatacactaaagt |
2799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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