View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_76 (Length: 258)
Name: NF7739_low_76
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_76 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 5707 - 5949
Alignment:
| Q |
16 |
ggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5707 |
ggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaa |
5806 |
T |
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| Q |
116 |
gaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5807 |
gaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggc |
5906 |
T |
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| Q |
216 |
aggcatagcaaacactgctactccaacaaagagtgattgtaaa |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5907 |
aggcatagcaaacactgctactccaacaaagagtgattgtaaa |
5949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 5707 - 5949
Alignment:
| Q |
16 |
ggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5707 |
ggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatcaaagtaactttcacttacttgtaccatctactaggtcttacaaaaa |
5806 |
T |
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| Q |
116 |
gaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggc |
215 |
Q |
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| T |
5807 |
gaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttttatggc |
5906 |
T |
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| Q |
216 |
aggcatagcaaacactgctactccaacaaagagtgattgtaaa |
258 |
Q |
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| T |
5907 |
aggcatagcaaacactgctactccaacaaagagtgattgtaaa |
5949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 49706439 - 49706539
Alignment:
| Q |
109 |
acaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcattt |
208 |
Q |
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||||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||| || ||||||||| ||| |
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| T |
49706439 |
acaaagaggagcaatatcctttcccagaactgattccccggaagactatctattgccatgtaagcaaaatatccccataaaaccgaggttggtatccttt |
49706538 |
T |
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| Q |
209 |
t |
209 |
Q |
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| T |
49706539 |
t |
49706539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 2235423 - 2235350
Alignment:
| Q |
112 |
aaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatcccca |
185 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||| |
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| T |
2235423 |
aaaagaagcaatatcctttcccaaaattggttccctgggagactatcaattgccatataagcaaaatatcccca |
2235350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 12308833 - 12308781
Alignment:
| Q |
157 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
209 |
Q |
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||||| |||||| ||||||||||||||||||| || || ||||| |||||||| |
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| T |
12308833 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
12308781 |
T |
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