View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_77 (Length: 258)
Name: NF7739_low_77
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33827939 - 33828179
Alignment:
| Q |
1 |
attttgatttatgtgtagtattataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagct |
100 |
Q |
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| T |
33827939 |
attttgatttatgtgtagtattataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagct |
33828038 |
T |
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| Q |
101 |
tccactgtaatgatgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgta |
200 |
Q |
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| T |
33828039 |
tccactgtaatgatgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgta |
33828138 |
T |
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| Q |
201 |
gttttgaaatcatccggttatggctgaaaagttattaaaac |
241 |
Q |
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| T |
33828139 |
gttttgaaatcatccggtaatggctgaaaaattattaaaac |
33828179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 33817860 - 33817911
Alignment:
| Q |
2 |
ttttgatttatgtgtagtattataggccatacaatcaatacagtaagaaact |
53 |
Q |
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| T |
33817860 |
ttttgatttatgtgtggtattataggccatacaattcatacagtaagaaact |
33817911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 33754212 - 33754255
Alignment:
| Q |
10 |
tatgtgtagtattataggccatacaatcaatacagtaagaaact |
53 |
Q |
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| T |
33754212 |
tatgtgtggtgttatagaccatacaatcaatacagtaagaaact |
33754255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 33849843 - 33849886
Alignment:
| Q |
10 |
tatgtgtagtattataggccatacaatcaatacagtaagaaact |
53 |
Q |
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||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
33849843 |
tatgtgtggtgttatagaccatacaatcaatacagtaagaaact |
33849886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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