View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_8 (Length: 667)

Name: NF7739_low_8
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_8
NF7739_low_8
[»] chr8 (8 HSPs)
chr8 (1-327)||(33168550-33168876)
chr8 (449-649)||(33168231-33168431)
chr8 (449-649)||(17315224-17315424)
chr8 (449-649)||(17337135-17337335)
chr8 (480-615)||(13539710-13539845)
chr8 (480-615)||(13684629-13684764)
chr8 (453-605)||(27933191-27933343)
chr8 (453-526)||(9798390-9798462)
[»] chr3 (16 HSPs)
chr3 (449-607)||(12881076-12881234)
chr3 (510-649)||(31139299-31139436)
chr3 (461-626)||(11271432-11271596)
chr3 (517-608)||(4863905-4863996)
chr3 (453-630)||(6013964-6014143)
chr3 (174-269)||(4850318-4850413)
chr3 (561-614)||(8890630-8890683)
chr3 (579-634)||(4847019-4847074)
chr3 (453-524)||(13833019-13833089)
chr3 (165-268)||(6017874-6017981)
chr3 (174-223)||(11271189-11271238)
chr3 (578-626)||(4284996-4285044)
chr3 (611-649)||(8890730-8890768)
chr3 (165-222)||(6013674-6013735)
chr3 (578-630)||(6018290-6018342)
chr3 (453-533)||(6020305-6020385)
[»] chr4 (6 HSPs)
chr4 (451-649)||(15154464-15154662)
chr4 (462-640)||(31371615-31371796)
chr4 (462-626)||(10520324-10520488)
chr4 (457-620)||(15048073-15048236)
chr4 (457-620)||(15106188-15106351)
chr4 (578-621)||(53000317-53000360)
[»] chr6 (1 HSPs)
chr6 (449-615)||(28973941-28974107)
[»] chr2 (5 HSPs)
chr2 (449-619)||(8172789-8172958)
chr2 (451-649)||(24185203-24185401)
chr2 (470-564)||(16917812-16917904)
chr2 (462-553)||(31603483-31603575)
chr2 (462-561)||(21511811-21511910)
[»] chr1 (8 HSPs)
chr1 (473-649)||(28553412-28553591)
chr1 (449-615)||(15918040-15918206)
chr1 (452-649)||(37627453-37627645)
chr1 (453-565)||(12788717-12788829)
chr1 (183-269)||(15917775-15917861)
chr1 (158-208)||(12788407-12788457)
chr1 (450-553)||(8236350-8236453)
chr1 (181-233)||(14601438-14601490)
[»] chr7 (5 HSPs)
chr7 (482-649)||(10234701-10234869)
chr7 (463-649)||(9046272-9046459)
chr7 (578-643)||(23395001-23395066)
chr7 (461-514)||(14545537-14545590)
chr7 (450-526)||(6847746-6847821)
[»] chr5 (2 HSPs)
chr5 (451-589)||(12685682-12685817)
chr5 (449-649)||(26266456-26266657)
[»] scaffold0003 (2 HSPs)
scaffold0003 (471-528)||(356806-356863)
scaffold0003 (172-205)||(357130-357163)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 33168876 - 33168550
Alignment:
Q  1 aaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcataagcacgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33168876 aaaagccataaagcaacagcacggtcgtgcacccctttctttagatcgtgcgtaggagaaccgtgccaacacgcacgactgtgtgcctcacaagcacgct 33168777  T
Q  101 cgtgcgcccttccagccaacataatttcaacagttttttaaggcaaacacaatcgtgtgtcctatgcagttagaaatagttgttacaaactcttagaatt 200  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  33168776 cgtgcgcccttccagccagcataatttcaacagtttttcaaggcaaacacaatcatgtgtcctatgcagttagaaatagttgttacaaactcatagaatt 33168677  T
Q  201 ctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcacatcccagccgaaagggcatcttagaaactag 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  33168676 ctttaattattgactagtaactcatttttaatgtattctcttaggttttagactataaatatgtctcacatcccagccaaaagggcatcttagaaactag 33168577  T
Q  301 taatcttggtataaagtggaaatcaaa 327  Q
    |||||||||||||||||||||||||||    
T  33168576 taatcttggtataaagtggaaatcaaa 33168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 449 - 649
Target Start/End: Complemental strand, 33168431 - 33168231
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33168431 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaataatctaatgattgaatcataatcaacctaagt 33168332  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33168331 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaacgaagaaccgagaagtgaagttagata 33168232  T
Q  649 t 649  Q
    |    
T  33168231 t 33168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 449 - 649
Target Start/End: Complemental strand, 17315424 - 17315224
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| || |||||| || |    
T  17315424 atattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatcctactcaacccaaat 17315325  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 648  Q
     || ||||||||||||   ||| | |||  ||||||||||||||  || ||||  || ||||||||||||||| |||| || || | |||||||| ||||    
T  17315324 ttagaatctattttattttaattctttttataatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggactgaaaggtgaagtttgata 17315225  T
Q  649 t 649  Q
    |    
T  17315224 t 17315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 449 - 649
Target Start/End: Complemental strand, 17337335 - 17337135
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| || |||||| || |    
T  17337335 atattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatcctactcaacccaaat 17337236  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagata 648  Q
     || ||||||||||||   ||| | |||  ||||||| ||||||  || ||||  || ||||||||||||||| |||| ||||| | |||||||| ||||    
T  17337235 ttagaatctattttattttaattcttttaataatctactctcatcatttttaagcttaataacaaatatcaaacgaaggaccgaaatgtgaagtttgata 17337136  T
Q  649 t 649  Q
    |    
T  17337135 t 17337135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 615
Target Start/End: Complemental strand, 13539845 - 13539710
Alignment:
Q  480 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 579  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13539845 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13539746  T
Q  580 aatctaatctcattgttgttaaattttataacaaat 615  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13539745 aatctactctcatcgttgtttaattttataacaaat 13539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 615
Target Start/End: Original strand, 13684629 - 13684764
Alignment:
Q  480 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 579  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13684629 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13684728  T
Q  580 aatctaatctcattgttgttaaattttataacaaat 615  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13684729 aatctactctcatcgttgtttaattttataacaaat 13684764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 605
Target Start/End: Original strand, 27933191 - 27933343
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaa 552  Q
    ||||||| ||||||||| ||||| || ||||| || ||||||||| | |   |||||||| ||||||||| |||||||||| || |||| | |||| ||     
T  27933191 tttaatcccttgtctacaatgatgatgagtgaatatacttttctacttttaggattgttgaaataatctattgattgaatcctattcaaaccaagtttag 27933290  T
Q  553 aatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 605  Q
    | ||||||||||| |||    ||| |||||||| |||||||||  ||||||||    
T  27933291 actctattttatatgaaattgttttctaatctattctcattgtctttaaattt 27933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 9798462 - 9798390
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 526  Q
    |||||||| ||||||||||| |||||||| ||||| ||  ||||||||| | |||||| |||||| ||||||||    
T  9798462 tttaatcttttgtctactataatcattagagagtagac-cttctagtcttgggattgtcggaatagtctaatga 9798390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 449 - 607
Target Start/End: Original strand, 12881076 - 12881234
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||| ||||||||||||||||||  ||||||| ||||||||  ||| | |||||| |||||||| ||||||||||||| ||||||||| || |    
T  12881076 atattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgtaggaataatttaatgattgaatcttaatcaacccaaat 12881175  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttta 607  Q
     || |||||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  12881176 ttagaatctattttataagaatccattttctaatataatctcatcattgttaaatttta 12881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 649
Target Start/End: Complemental strand, 31139436 - 31139299
Alignment:
Q  510 ttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttata 609  Q
    |||||||||| |||||||||||||||| | |||| |||| |||||| |  ||||||| ||  ||||| ||||| |||| ||||||||||||||| |||||    
T  31139436 ttggaataatttaatgattgaatcatatttaacccaagtataaaatgt--tttataaaaaatcattttctaatataatttcattgttgttaaatattata 31139339  T
Q  610 acaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    |||||||||||| |||||| ||||| ||||| || |||||    
T  31139338 acaaatatcaaacgaagaatcgagatgtgaactttgatat 31139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 461 - 626
Target Start/End: Original strand, 11271432 - 11271596
Alignment:
Q  461 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatt 560  Q
    |||||||||||||||||| |||||||| ||||| |||||||   | |||||||| |||| |||||||||| || || |||||  ||||||| ||||||||    
T  11271432 cttgtctactatgatcatgagtgagtagacttt-ctagtcttaggtttgttggactaatataatgattgactcctattcaactgaagtctagaatctatt 11271530  T
Q  561 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 626  Q
    ||||   ||| | ||| |||||||||||||||  || ||||  || ||||||||||||||| ||||    
T  11271531 ttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaag 11271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 608
Target Start/End: Original strand, 4863905 - 4863996
Alignment:
Q  517 aatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttat 608  Q
    ||||||||||||||||  ||||||||| ||||||| | ||||||||||||||||||||||  ||||||||| |||| |||  ||||||||||    
T  4863905 aatctaatgattgaatgttaatcaacccaagtctagactctattttataagaatccattttataatctaatatcatcgttactaaattttat 4863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 630
Target Start/End: Original strand, 6013964 - 6014143
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaat-cat-aatcaacctaagtct 550  Q
    ||||||||||||||||||||||| || ||||||| |||| ||||| ||| | |||||| || |||||| ||| ||| ||| |||  || |||| ||||||    
T  6013964 tttaatctcttgtctactatgattatgagtgagtgaactcttctattcttgggattgtggggataatcaaataatttaatccatgtataaacccaagtct 6014063  T
Q  551 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 630  Q
    | | |||||||| || |||    ||| |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6014064 agactctattttctatgaaattgtttgctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 4850318 - 4850413
Alignment:
Q  174 aaatagttgttacaaactcttagaattctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcac 269  Q
    ||||||||||||||| || ||||||||||||||||  || || ||||||| |||||||| |||| | | ||| | ||| |||||||||||||||||    
T  4850318 aaatagttgttacaaccttttagaattctttagtttatggcttgtaactcgtttttaatatattatatgaggctctaggctataaatatacctcac 4850413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 614
Target Start/End: Original strand, 8890630 - 8890683
Alignment:
Q  561 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaa 614  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaa 8890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 634
Target Start/End: Original strand, 4847019 - 4847074
Alignment:
Q  579 taatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgaga 634  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  4847019 taatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgaga 4847074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 524
Target Start/End: Complemental strand, 13833089 - 13833019
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 524  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||| ||||||    
T  13833089 tttaatcttttgtctactatgatcatgagtgagtagaccttt-tagttttgtgattgttggaatagtctaat 13833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 6017874 - 6017981
Alignment:
Q  165 tgcagttagaaatagttgttacaaactcttagaatt----ctttagttattgactagtaactcatttttaatgtattctcttaggttttagactataaat 260  Q
    |||||| |||||||  ||||||||||||||||||||    ||||||||||||||| |||||||||| | ||||  || ||  ||| ||||| ||||||||    
T  6017874 tgcagtcagaaatatctgttacaaactcttagaattaattctttagttattgacttgtaactcattatcaatgccttgtccgaggctttaggctataaat 6017973  T
Q  261 atacctca 268  Q
    | ||||||    
T  6017974 agacctca 6017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 11271189 - 11271238
Alignment:
Q  174 aaatagttgttacaaactcttagaattctttagttattgactagtaactc 223  Q
    ||||| |||||| ||||||||||||||||||||||||||| | |||||||    
T  11271189 aaataattgttataaactcttagaattctttagttattgatttgtaactc 11271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 626
Target Start/End: Original strand, 4284996 - 4285044
Alignment:
Q  578 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 626  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  4284996 ctaatctaatctcattgttattaaattttatataaaatattaaatgaag 4285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 649
Target Start/End: Original strand, 8890730 - 8890768
Alignment:
Q  611 caaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8890730 caaatatcaaacgaagaaccgagaagtgaagtttgatat 8890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 6013674 - 6013735
Alignment:
Q  165 tgcagttagaaatagttgttacaaactcttag----aattctttagttattgactagtaact 222  Q
    |||||| ||||||||  |||||||||||||||    ||||||||||||||||||| ||||||    
T  6013674 tgcagtcagaaatagcggttacaaactcttagaattaattctttagttattgacttgtaact 6013735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 630
Target Start/End: Original strand, 6018290 - 6018342
Alignment:
Q  578 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 630  Q
    |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6018290 ctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6018342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 6020305 - 6020385
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatc 533  Q
    |||||||| || |||||||||||||| |||||||||| | ||||| ||| | |||||| || |||||| ||| ||| ||||    
T  6020305 tttaatctattctctactatgatcatgagtgagtaaattcttctattcttgggattgtagggataatcaaataatttaatc 6020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 451 - 649
Target Start/End: Original strand, 15154464 - 15154662
Alignment:
Q  451 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 550  Q
    ||||||||| ||||||||||| |||||| |||||||| ||| || |||||| | |||||||||| |||||||||||||||||| || |||||||||||||    
T  15154464 attttaatcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacctaagtct 15154563  T
Q  551 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    | | || ||||||| | ||| ||||| ||||||||||||| |  ||||| ||| | ||||||||||||||||||   ||||| | |||||||| |||||    
T  15154564 agactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtttgatat 15154662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 462 - 640
Target Start/End: Complemental strand, 31371796 - 31371615
Alignment:
Q  462 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac-ctaagtctaaaatctatt 560  Q
    ||||| |||||||||||  ||||||| ||| | ||||||| | || ||||| |||||||||||||||||| | |||||||| | ||||||||| ||||||    
T  31371796 ttgtcaactatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaatgattgaaccctaatcaacgccaagtctaaactctatt 31371698  T
Q  561 ttataag---aatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaa 640  Q
    || ||||   ||||  ||| |||||||||||||||  || |||||||||||||||||||| ||| |||||||| ||| |||||    
T  31371697 ttgtaagctgaatctcttttctaatctaatctcatcattattaaattttataacaaatatgaaacgaagaacctagatgtgaa 31371615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 462 - 626
Target Start/End: Complemental strand, 10520488 - 10520324
Alignment:
Q  462 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattt 561  Q
    ||||||||||||||||   ||||||| |||||| || |||   |||||||| ||||||||||||||  |||| ||||||||  |||| || | |||||||    
T  10520488 ttgtctactatgatcacacgtgagtagacttttatactctttggattgttgaaataatctaatgatgaaatcttaatcaactcaagtttagactctattt 10520389  T
Q  562 tataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 626  Q
    | || ||||  || |  |||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  10520388 tgtatgaatttatgttgtaatctaatctcattgttattgaattttaaatcaaatatcaaacgaag 10520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 620
Target Start/End: Complemental strand, 15048236 - 15048073
Alignment:
Q  457 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 556  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15048236 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15048138  T
Q  557 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 620  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15048137 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 620
Target Start/End: Original strand, 15106188 - 15106351
Alignment:
Q  457 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 556  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15106188 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15106286  T
Q  557 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 620  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15106287 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 621
Target Start/End: Complemental strand, 53000360 - 53000317
Alignment:
Q  578 ctaatctaatctcattgttgttaaattttataacaaatatcaaa 621  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  53000360 ctaatctaatctcatcgttattaaattttatatcaaatatcaaa 53000317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 449 - 615
Target Start/End: Original strand, 28973941 - 28974107
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||| ||| ||||||||||| ||  |||| |  ||||||||| ||| | |||||||||||||||||||||| | |||| ||||||||| ||||    
T  28973941 atattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatgactcaatcctaatcaacccaagt 28974040  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 615  Q
        | |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  28974041 tctgactctattttataagaatccatttgctaatctaatctcatcgttattaaattttataacaaat 28974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 449 - 619
Target Start/End: Complemental strand, 8172958 - 8172789
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||||||||||| ||||||||||  || | |  |||||| ||||||   ||||||| |||||||||||||||| |||||||||||||  ||||    
T  8172958 atattttaatctcttgtctgctatgatcatgtgtaaattgacttttttagtctttggattgttagaataatctaatgattaaatcataatcaactcaagt 8172859  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 619  Q
    ||||| ||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||| ||||||||||||    
T  8172858 ctaaactctattttataggaattcattttctaatataatctcagtgttgttaaa-tttgtaacaaatatca 8172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 451 - 649
Target Start/End: Complemental strand, 24185401 - 24185203
Alignment:
Q  451 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 550  Q
    |||||||||  ||||||||||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||||| |||  ||  ||||| ||||||    
T  24185401 attttaatccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaacccaagtct 24185302  T
Q  551 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    |  |  | ||| |||| |   ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||| |||||||| |||||    
T  24185301 aggacatgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagtttgatat 24185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 564
Target Start/End: Original strand, 16917812 - 16917904
Alignment:
Q  470 tatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttat 564  Q
    ||||||||| | |||||| |||||| |||||| | ||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16917812 tatgatcatgaatgagtagactttt-tagtcttgggattgttagactaatctaatgattgaatcatattcaacc-aagtctagaatctattttat 16917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 31603575 - 31603483
Alignment:
Q  462 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtctaaa 553  Q
    |||||||||||||||||  ||||||| | ||||||||||| |  ||||||  |||||||||||||| ||||| ||||| |||| |||||||||    
T  31603575 ttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 561
Target Start/End: Complemental strand, 21511910 - 21511811
Alignment:
Q  462 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaa-atctatt 560  Q
    |||||||||||||| || |||||||| ||  || |||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||||| |||||||    
T  21511910 ttgtctactatgataatgagtgagtagaccatt-tagtcttgggattgttggaatagtctaatgacttaatcctattcaaaccaagtctaaatatctatt 21511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 473 - 649
Target Start/End: Original strand, 28553412 - 28553591
Alignment:
Q  473 gatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatcc 572  Q
    |||||| ||||| || | ||||||||||| |  |||||| ||||||||| |||||||||||||| |||||| ||||||| | |||||||||| | ||| |    
T  28553412 gatcatgagtgaatagatttttctagtcttgatattgttagaataatctgatgattgaatcatattcaacccaagtctagactctattttattaaaattc 28553511  T
Q  573 atttcctaatctaatctcattgttgttaaattt---tataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    |||| |||||||||||||||||||||| | |||   |||||||||||||||| |||| | ||| | |||||||| |||||    
T  28553512 attttctaatctaatctcattgttgtttagtttatatataacaaatatcaaacgaaggatcgaaaggtgaagtttgatat 28553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 449 - 615
Target Start/End: Original strand, 15918040 - 15918206
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    |||||||||| |||| |||||||||||| | | |||||| ||||| || || | | ||||||||||||||||||||||||||||| ||||||||  ||||    
T  15918040 atattttaatatcttatctactatgatcttgattgagtagactttccttgtattgggattgttggaataatctaatgattgaatcctaatcaactcaagt 15918139  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 615  Q
    ||| |  |||||||| | ||||  || |  |||| ||||||||| ||| |||||||||||| |||||    
T  15918140 ctagaccctattttacatgaatttatgttttaatttaatctcatcgttattaaattttatatcaaat 15918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 649
Target Start/End: Original strand, 37627453 - 37627645
Alignment:
Q  452 ttttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtct 550  Q
    |||||||||||||||||||||||||||  ||||||| || ||||||||||   ||||||||||||||||||| ||||||||  ||||| |||| ||||||    
T  37627453 ttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaaggattgaattctaatcaaaccaaagtct 37627552  T
Q  551 aaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    | |     |||||| |   | | ||  ||||||||||||||| ||| |||||||||||| ||||||||||| |||| || |||| ||||| || |||||    
T  37627553 aga----tttttatgaacttgcgtt--ctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtactgagaggtgaaatttgatat 37627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 565
Target Start/End: Original strand, 12788717 - 12788829
Alignment:
Q  453 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaa 552  Q
    ||||||| ||||||||| || ||||| |||||||| | ||||||||||| | |||||||| ||||| |||||||| ||| | || |||||| |||| ||     
T  12788717 tttaatcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttgaaataagctaatgatggaaccctattcaacccaagtatac 12788816  T
Q  553 aatctattttata 565  Q
    | |||||||||||    
T  12788817 actctattttata 12788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 15917775 - 15917861
Alignment:
Q  183 ttacaaactcttagaattctttagtt-attgactagtaactcatttttaatgtattctcttaggttttagactataaatatacctcac 269  Q
    |||||||||||||||||||||| ||| |||| || ||||||| ||||||||||||| ||| ||| | ||| ||||||||| |||||||    
T  15917775 ttacaaactcttagaattctttggttgattgcct-gtaactcgtttttaatgtattgtctgagggtctaggctataaatagacctcac 15917861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 12788407 - 12788457
Alignment:
Q  158 tgtcctatgcagttagaaatagttgttacaaactcttagaattctttagtt 208  Q
    ||||||||||||| | |||||| |||||||||||||||||||||| |||||    
T  12788407 tgtcctatgcagtcataaatagctgttacaaactcttagaattctctagtt 12788457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 553
Target Start/End: Original strand, 8236350 - 8236453
Alignment:
Q  450 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtc-tagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    |||||||||||  |||||||||||||||| |||||||| || ||| ||||| | | ||||||||||||| |||||||| | |||| || |||| | ||||    
T  8236350 tattttaatcttatgtctactatgatcatgagtgagtagaccttt-tagtctttgggattgttggaatagtctaatgacttaatcttattcaaaccaagt 8236448  T
Q  549 ctaaa 553  Q
    |||||    
T  8236449 ctaaa 8236453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 14601490 - 14601438
Alignment:
Q  181 tgttacaaactcttagaattctttagttattgactagtaactcatttttaatg 233  Q
    |||||||||||||||||||||||||||||||  || ||||||| |||| ||||    
T  14601490 tgttacaaactcttagaattctttagttattagcttgtaactcgttttcaatg 14601438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 649
Target Start/End: Original strand, 10234701 - 10234869
Alignment:
Q  482 tgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaa-cctaagtctaaaatctattttataagaatccatttccta 580  Q
    |||||| || ||| |||||| |||||||||| |||||||||||||||||||| |||| || || ||||||||| ||||||||||| ||||  |  | |||    
T  10234701 tgagtagacctttttagtcttgtgattgttgaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttatatgaatttacgttcta 10234800  T
Q  581 atctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    ||||||||  ||||||||||||||| ||| ||||||||||| |||| ||||||  |||||||| |||||    
T  10234801 atctaatcgtattgttgttaaatttaatatcaaatatcaaacgaagtaccgagcggtgaagtttgatat 10234869  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 649
Target Start/End: Original strand, 9046272 - 9046459
Alignment:
Q  463 tgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatttt 562  Q
    ||||||| |||||||| |||||||| |||| ||||| || |  ||||||||||| || |||||||  |||| || | || | || | |||| ||||||||    
T  9046272 tgtctacgatgatcatgagtgagtagacttgtctagccttggaattgttggaatgatataatgatccaatcctatttaaaccaaatttaaattctatttt 9046371  T
Q  563 ataagaatccatttcctaatctaatctcattg-ttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 649  Q
    || | |||   ||| ||||||||||||||| | || ||||   ||||| ||||||||||| |||| ||||| |||||||||| |||||    
T  9046372 attacaatttgttttctaatctaatctcatagttttttaagccttatatcaaatatcaaacgaaggaccgaaaagtgaagtttgatat 9046459  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 643
Target Start/End: Original strand, 23395001 - 23395066
Alignment:
Q  578 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 643  Q
    |||||||| |||||| ||| |||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  23395001 ctaatctattctcatcgtttttaaatttgatatctaatattaaatgaagaaccgaaaagtgaagtt 23395066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 14545537 - 14545590
Alignment:
Q  461 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgga 514  Q
    ||||||||| |||| |||||||||||| |||| ||| |||| ||||||||||||    
T  14545537 cttgtctacgatgaacattagtgagtagacttctcttgtcttgtgattgttgga 14545590  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 6847821 - 6847746
Alignment:
Q  450 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 526  Q
    ||||| ||||| ||||||||||||||||| |||||||| ||  | ||||| | | ||||||||||||| ||||||||    
T  6847821 tatttaaatcttttgtctactatgatcataagtgagtagac-ctcctagttttgggattgttggaatagtctaatga 6847746  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 451 - 589
Target Start/End: Complemental strand, 12685817 - 12685682
Alignment:
Q  451 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 550  Q
    |||||||||  |||||||| |||||| | | |||||| |||||   ||||| | |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  12685817 attttaatcctttgtctacaatgatcgtgactgagtacacttt---agtcttgggattgttggactaatctaatgattgaatcatattcaacccaagtct 12685721  T
Q  551 aaaatctattttataagaatccatttcctaatctaatct 589  Q
    ||||||||||||||   ||| | ||| ||||||||||||    
T  12685720 aaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 449 - 649
Target Start/End: Original strand, 26266456 - 26266657
Alignment:
Q  449 atattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagt 548  Q
    ||||||||||||||| |||| |||||  || ||| |||| ||||||||| | | | |||||||||| |||||||||||||||||| || | |||| ||||    
T  26266456 atattttaatctcttctctaatatgagaatgagtaagtagacttttctaatgttgagattgttggactaatctaatgattgaatcctatttaacccaagt 26266555  T
Q  549 ctaaaatctattttataagaatccatttcctaatctaatctcat-tgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagat 647  Q
     |  ||| || |||||   ||| | ||| ||||| |||||||||   |||||||  || |||| ||||||||||||||| ||||| |||||||||| |||    
T  26266556 atggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaataaaaaatatcaaatgaaggaccgaaaagtgaagtttgat 26266655  T
Q  648 at 649  Q
    ||    
T  26266656 at 26266657  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 356863 - 356806
Alignment:
Q  471 atgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgatt 528  Q
    ||||||||| |||| |||||| || |||||| | |||||| |||||||||||||||||    
T  356863 atgatcattggtgaataaactcttttagtcttgagattgtgggaataatctaatgatt 356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 357163 - 357130
Alignment:
Q  172 agaaatagttgttacaaactcttagaattcttta 205  Q
    ||||||||||||| ||||||||||||||||||||    
T  357163 agaaatagttgttgcaaactcttagaattcttta 357130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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