View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_81 (Length: 250)

Name: NF7739_low_81
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_81
NF7739_low_81
[»] chr4 (4 HSPs)
chr4 (124-244)||(41333016-41333136)
chr4 (1-94)||(41333159-41333252)
chr4 (124-184)||(10359052-10359112)
chr4 (140-176)||(10153413-10153449)
[»] chr3 (5 HSPs)
chr3 (124-244)||(9259639-9259758)
chr3 (124-184)||(30187251-30187311)
chr3 (124-184)||(646439-646499)
chr3 (139-184)||(20358056-20358101)
chr3 (128-184)||(14092715-14092771)
[»] chr8 (3 HSPs)
chr8 (124-228)||(43978399-43978505)
chr8 (128-177)||(23636598-23636647)
chr8 (159-228)||(24211693-24211762)
[»] chr7 (6 HSPs)
chr7 (124-215)||(9600213-9600303)
chr7 (124-215)||(9827784-9827874)
chr7 (127-228)||(10427782-10427883)
chr7 (159-226)||(13769109-13769175)
chr7 (130-179)||(29673125-29673174)
chr7 (128-176)||(13851674-13851722)
[»] chr6 (2 HSPs)
chr6 (124-215)||(3024799-3024889)
chr6 (145-181)||(9830780-9830816)
[»] chr5 (2 HSPs)
chr5 (124-215)||(22099098-22099188)
chr5 (144-176)||(24650349-24650381)
[»] chr2 (2 HSPs)
chr2 (124-206)||(21830319-21830400)
chr2 (128-176)||(19177449-19177497)
[»] scaffold1951 (1 HSPs)
scaffold1951 (127-184)||(465-522)
[»] chr1 (1 HSPs)
chr1 (132-176)||(33799138-33799182)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 41333136 - 41333016
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaaggcaaaca 223  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41333136 tggaattaaatcaataaaagtgattcatctcgcagaaggtctgcaaaagagaatcatccaatcaagttacaagattaatgtctagtgccaaaggcaaaca 41333037  T
Q  224 aaaaagctccacaacaccaaa 244  Q
    |||||||||||||||||||||    
T  41333036 aaaaagctccacaacaccaaa 41333016  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 41333252 - 41333159
Alignment:
Q  1 tgtagcagctagcaagtttatccaatttaagttataagcagtacaatgatatgtttgaagttttcaccgcagcctcagctggcccatgtttttt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41333252 tgtagcagctagcaagtttatccaatttaagttataagcagtacaatgatatgtttgaagttttcacagcagcctcagctggcccatgtttttt 41333159  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 10359112 - 10359052
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    |||||||||||||| || |||||||||||| | | ||||| ||||||||||||||| ||||    
T  10359112 tggaattaaatcaccaagagtgattcatctagcacaaggtgtgcaaaagagaatcacccaa 10359052  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 10153449 - 10153413
Alignment:
Q  140 aaagtgattcatctcgtataaggtctgcaaaagagaa 176  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  10153449 aaagtgattcatctcgcataaggtgtgcaaaagagaa 10153413  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 9259758 - 9259639
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaaggcaaaca 223  Q
    |||||||||| ||| |||| | ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||     
T  9259758 tggaattaaaacacaaaaactaatttatctcttacaaggtgtgcaaaagagaatcatccaatcaagttacaaggttaatgtcttgtgccaaaagcaaac- 9259660  T
Q  224 aaaaagctccacaacaccaaa 244  Q
     ||||||||||||||||||||    
T  9259659 gaaaagctccacaacaccaaa 9259639  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 30187251 - 30187311
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||| ||||    
T  30187251 tggaattaaatcactaagagtgattcatctcgcacaaggtgtgcaaaagagaatcacccaa 30187311  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 646499 - 646439
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    |||||||||||||| |  ||||||||||||||||||| || ||||||||||||||| ||||    
T  646499 tggaattaaatcaccatgagtgattcatctcgtataaagtatgcaaaagagaatcacccaa 646439  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 20358101 - 20358056
Alignment:
Q  139 aaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    |||| ||||||||||| |||||||| ||||||||||||||| ||||    
T  20358101 aaaaatgattcatctcatataaggtgtgcaaaagagaatcacccaa 20358056  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 14092771 - 14092715
Alignment:
Q  128 attaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    ||||||||| ||| |||||||||||||| | ||||| || |||||||||||| ||||    
T  14092771 attaaatcattaagagtgattcatctcgcacaaggtgtgtaaaagagaatcacccaa 14092715  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 43978505 - 43978399
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggtta--atgtctagtgccaaaggcaaa 221  Q
    |||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||| ||||||||||||||| ||||  ||||||  ||||||| |||||    
T  43978505 tggaattaaatcaccaaaaatgattcatctcgcacaaggtatgcaatagagaatcacccaatcaagttacaatgttaatatgtctgatgccaaaagcaaa 43978406  T
Q  222 caaaaaa 228  Q
    |||||||    
T  43978405 caaaaaa 43978399  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23636598 - 23636647
Alignment:
Q  128 attaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaat 177  Q
    |||||||||| || |||||||||||||||| ||||| |||||||||||||    
T  23636598 attaaatcaccaagagtgattcatctcgtacaaggtgtgcaaaagagaat 23636647  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 24211762 - 24211693
Alignment:
Q  159 aaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaaggcaaacaaaaaa 228  Q
    ||||| ||||||||||||||  |||||||| |||||| || ||||||  |||||||| ||||| ||||||    
T  24211762 aaggtgtgcaaaagagaatcgcccaatcaaattacaaagtaaatgtcaggtgccaaaagcaaaaaaaaaa 24211693  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 9600213 - 9600303
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaa 215  Q
    |||||||||||||||| |  |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  9600213 tggaattaaatcactatagatgattcatctcgtacaaggtgtgcaaaagagaatcatccaa-caaattacaaggttaaagtctggtgccaaa 9600303  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 9827784 - 9827874
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaa 215  Q
    |||||||||||||||| |  |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  9827784 tggaattaaatcactatagatgattcatctcgtacaaggtgtgcaaaagagaatcatccaa-caaattacaaggttaaagtctggtgccaaa 9827874  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 10427883 - 10427782
Alignment:
Q  127 aattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaaggcaaacaaaa 226  Q
    ||||||||||| ||||||||||||||||| | ||||| ||||||||||||||| |||||||| |||||| |||||| | | ||  |||| ||||||||||    
T  10427883 aattaaatcaccaaaagtgattcatctcgcacaaggtgtgcaaaagagaatcacccaatcaaattacaaagttaatatttggtagcaaaagcaaacaaaa 10427784  T
Q  227 aa 228  Q
    ||    
T  10427783 aa 10427782  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 13769175 - 13769109
Alignment:
Q  159 aaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaaggcaaacaaaa 226  Q
    ||||| ||||||||||||||   |||||||||||||| |||||||||| |||||||| |||| |||||    
T  13769175 aaggtgtgcaaaagagaatctctcaatcaagttacaa-gttaatgtctggtgccaaaagcaagcaaaa 13769109  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 29673174 - 29673125
Alignment:
Q  130 taaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatca 179  Q
    ||||||| |||||| |||| |||||||| ||||| |||||||||||||||    
T  29673174 taaatcattaaaagcgattaatctcgtacaaggtatgcaaaagagaatca 29673125  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 13851722 - 13851674
Alignment:
Q  128 attaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaa 176  Q
    |||| ||||| || |||||||||||||||| ||||| ||||||||||||    
T  13851722 attagatcacaaagagtgattcatctcgtacaaggtgtgcaaaagagaa 13851674  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 3024799 - 3024889
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaa 215  Q
    |||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||||| |||| ||| |||||||||||| |||||||| ||||    
T  3024799 tggaattaaatcatcaaaggtgattcatctcgcataaggtgtgcaaaagagaatcacccaa-caaattacaaggttaaagtctagtgtcaaa 3024889  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 9830816 - 9830780
Alignment:
Q  145 gattcatctcgtataaggtctgcaaaagagaatcatc 181  Q
    ||||||||||||||||| | |||||||||||||||||    
T  9830816 gattcatctcgtataagatgtgcaaaagagaatcatc 9830780  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 22099188 - 22099098
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtctagtgccaaa 215  Q
    |||||||||||||| | | ||||||||||||| | ||||| ||||||||||||||| |||| ||| |||||||||||| |||| ||||||||    
T  22099188 tggaattaaatcaccataggtgattcatctcgcacaaggtgtgcaaaagagaatca-ccaaacaaattacaaggttaaagtctggtgccaaa 22099098  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 24650381 - 24650349
Alignment:
Q  144 tgattcatctcgtataaggtctgcaaaagagaa 176  Q
    |||||||||||||||||||| ||||||||||||    
T  24650381 tgattcatctcgtataaggtgtgcaaaagagaa 24650349  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 21830400 - 21830319
Alignment:
Q  124 tggaattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaatcaagttacaaggttaatgtct 206  Q
    ||||||||||||||||| |||||||||||||| ||||| | ||| ||||||||||| || | |||||||||||||||| ||||    
T  21830400 tggaattaaatcactaagagtgattcatctcgcataagatgtgcgaaagagaatca-ccgaacaagttacaaggttaaggtct 21830319  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 19177497 - 19177449
Alignment:
Q  128 attaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaa 176  Q
    |||||||||| ||||| ||||||||||||| ||||| ||||||||||||    
T  19177497 attaaatcacgaaaagcgattcatctcgtacaaggtgtgcaaaagagaa 19177449  T

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Target: scaffold1951 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 465 - 522
Alignment:
Q  127 aattaaatcactaaaagtgattcatctcgtataaggtctgcaaaagagaatcatccaa 184  Q
    ||||||||||| || |||||||||||||| | ||||| ||||||||||||||| ||||    
T  465 aattaaatcaccaagagtgattcatctcgcacaaggtgtgcaaaagagaatcacccaa 522  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 33799138 - 33799182
Alignment:
Q  132 aatcactaaaagtgattcatctcgtataaggtctgcaaaagagaa 176  Q
    |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  33799138 aatcacaaaaagtgattcatctcgcacaaggtgtgcaaaagagaa 33799182  T

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