View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_9 (Length: 658)
Name: NF7739_low_9
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Complemental strand, 42342440 - 42341796
Alignment:
| Q |
1 |
tatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagcatgatccttgtcagtat |
100 |
Q |
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| T |
42342440 |
tatggctaattatagtttagaccatcattggttacctgttgtcttcttctcctctcgagttcagcctgaagaataaaagaagcatgatccttgtcagtat |
42342341 |
T |
|
| Q |
101 |
aattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgagaattctcttctcttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342340 |
aattgaatcactaaagaaaaactatcaaatattcttataatagttcatgttgtttggcagtaccagtgcctgtttcagttgagaattctcttctcttaat |
42342241 |
T |
|
| Q |
201 |
tgattcagttctgcttctaattcaactgtataggcctgcnnnnnnnnnnnnnnnnnntgtgtcacaaaggagtcacattaacaatataatggcaaatatt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342240 |
tgattcagttctgcttctaattcaactgtataggcctgcaaaagcaacaaagaaaaatgtgtcacaaaggagtcacattaacaatataatggcaaatatt |
42342141 |
T |
|
| Q |
301 |
aaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaatgttaccttcaatagca |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342140 |
aaactagattaaacatactatttctaatttggatgtaaagagttgataaaaaattgacatattaccaattcttcttaaactaatgttaccttcaatagca |
42342041 |
T |
|
| Q |
401 |
tataaatataatgttgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttagatttaagtataatatga |
500 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42342040 |
tataaatataatgctgtattatcttgatcatatatacataagaatttcaaataattcatacatttgtggatacataattttaga-ttaagtataatatga |
42341942 |
T |
|
| Q |
501 |
ttggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctctccaccaccctttcaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341941 |
ttggttaaaatttcaggaacctgttttctggctctagatcttgctgctgactctctattcttgatcatcctcctctgccttctctccaccaccctttcaa |
42341842 |
T |
|
| Q |
601 |
caggaccatcaaccatcctctttcttcctcgtaaaccattcatatc |
646 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341841 |
caggaccatcaaccatcctctttcttcctcgtaaaccattcatatc |
42341796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 9522495 - 9522550
Alignment:
| Q |
170 |
ctgtttcagttgagaattctcttctcttaattgattcagttctgcttctaattcaa |
225 |
Q |
| |
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|||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||| |
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| T |
9522495 |
ctgtttcagtcaagaattatcttatcttaactgattcaattctgcttctaattcaa |
9522550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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