View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_low_91 (Length: 235)
Name: NF7739_low_91
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_91 |
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| [»] chr1 (5 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 45795642 - 45795444
Alignment:
| Q |
37 |
cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
136 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45795642 |
cttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
45795543 |
T |
|
| Q |
137 |
tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
45795542 |
tatggttgatggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgtttt |
45795444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 13867537 - 13867735
Alignment:
| Q |
37 |
cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
136 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
13867537 |
cttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggtagctga |
13867636 |
T |
|
| Q |
137 |
tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
13867637 |
tatggttgttggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgtttt |
13867735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 34352854 - 34352752
Alignment:
| Q |
42 |
ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatgg |
141 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||||| | |||| |||||||||| ||||||| |||||| |||||| |
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| T |
34352854 |
ttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatgg |
34352755 |
T |
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| Q |
142 |
ttg |
144 |
Q |
| |
|
||| |
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|
| T |
34352754 |
ttg |
34352752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 34352712 - 34352643
Alignment:
| Q |
166 |
ggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||||||||| |
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| T |
34352712 |
ggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaatggtgtcgtttt |
34352643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 5809012 - 5808973
Alignment:
| Q |
42 |
ttttggtatgacaggtggctgagtgatgttcctttttgta |
81 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
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| T |
5809012 |
ttttggtatgacaggtggcttggtgatgttcctttttgta |
5808973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 43516452 - 43516650
Alignment:
| Q |
37 |
cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
136 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43516452 |
cttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
43516551 |
T |
|
| Q |
137 |
tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
43516552 |
tatggttgatggagaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgtttt |
43516650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 20544362 - 20544305
Alignment:
| Q |
177 |
agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttt |
234 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
20544362 |
agggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcgttt |
20544305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 54483016 - 54483054
Alignment:
| Q |
172 |
ggttaagggtgtgggaggaggatttgctagaggagtgta |
210 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |
|
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| T |
54483016 |
ggttatgggtgtgggaggaggatttggtagaggagtgta |
54483054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 40513428 - 40513626
Alignment:
| Q |
37 |
cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
136 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
40513428 |
cttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgatagctga |
40513527 |
T |
|
| Q |
137 |
tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
40513528 |
tatggttgctggagaggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgtttt |
40513626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 18368801 - 18368850
Alignment:
| Q |
161 |
ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
18368801 |
ttggcggcgtaggttgtgggtgtgggaggaggctttgctagaggagtgta |
18368850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 34829850 - 34829774
Alignment:
| Q |
42 |
ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataa |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| ||||| ||||| ||||| || ||||||||||||| |
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|
| T |
34829850 |
ttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataa |
34829774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 11196666 - 11196571
Alignment:
| Q |
140 |
ggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||| |||||||||| | |||| |||| | ||| ||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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|
| T |
11196666 |
ggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgtttt |
11196571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 11196775 - 11196680
Alignment:
| Q |
49 |
atgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttg |
144 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| |||||||||| || ||||| | |||| ||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
11196775 |
atgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatggttg |
11196680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 35488131 - 35488082
Alignment:
| Q |
161 |
ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta |
210 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
35488131 |
ttggcggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgta |
35488082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 8066072 - 8066121
Alignment:
| Q |
161 |
ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta |
210 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| | ||||||||||||||| |
|
|
| T |
8066072 |
ttggcggcgtaggttgtgggcgtgggaggaggctatgctagaggagtgta |
8066121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 14686712 - 14686820
Alignment:
| Q |
37 |
cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga |
136 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||| || ||||||||| | ||| |||||| |||||||| |||||||| || ||||| |
|
|
| T |
14686712 |
cttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctga |
14686811 |
T |
|
| Q |
137 |
tatggttga |
145 |
Q |
| |
|
||||||||| |
|
|
| T |
14686812 |
tatggttga |
14686820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 23065893 - 23065944
Alignment:
| Q |
161 |
ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag |
212 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23065893 |
ttggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaag |
23065944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 9565661 - 9565610
Alignment:
| Q |
161 |
ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag |
212 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
9565661 |
ttggaggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgtaag |
9565610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 26855991 - 26855933
Alignment:
| Q |
177 |
agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
26855991 |
agggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcatttt |
26855933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 34472 - 34529
Alignment:
| Q |
178 |
gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || ||| |||||||||| ||||| |
|
|
| T |
34472 |
gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgtttt |
34529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 476490 - 476433
Alignment:
| Q |
178 |
gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| || ||| |||||||||| ||||| |
|
|
| T |
476490 |
gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgtttt |
476433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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