View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_92 (Length: 228)

Name: NF7739_low_92
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_92
NF7739_low_92
[»] chr3 (3 HSPs)
chr3 (27-209)||(31424484-31424666)
chr3 (45-193)||(823097-823247)
chr3 (61-160)||(53279643-53279742)
[»] chr4 (2 HSPs)
chr4 (49-188)||(48567302-48567441)
chr4 (49-126)||(23440152-23440230)
[»] chr1 (4 HSPs)
chr1 (45-183)||(9613087-9613225)
chr1 (54-111)||(22200277-22200334)
chr1 (54-111)||(22235189-22235246)
chr1 (142-190)||(27905761-27905809)
[»] chr2 (5 HSPs)
chr2 (49-192)||(1946042-1946186)
chr2 (54-172)||(1945841-1945960)
chr2 (51-158)||(15817096-15817202)
chr2 (50-87)||(11199759-11199796)
chr2 (165-193)||(27740341-27740369)
[»] chr8 (4 HSPs)
chr8 (27-132)||(17819533-17819637)
chr8 (44-133)||(31503088-31503177)
chr8 (121-190)||(5221506-5221576)
chr8 (147-187)||(25184827-25184867)
[»] chr5 (1 HSPs)
chr5 (50-194)||(26367678-26367823)
[»] chr7 (2 HSPs)
chr7 (39-133)||(15126823-15126917)
chr7 (52-111)||(2613623-2613682)
[»] chr6 (2 HSPs)
chr6 (52-111)||(21029892-21029952)
chr6 (52-126)||(32316639-32316713)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 31424484 - 31424666
Alignment:
Q  27 tttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424484 tttcgtgttcaatggctgtttatgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 31424583  T
Q  127 ggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatacgacgcctttatcatgtaacctctgat 209  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  31424584 ggtgatgattgttttgtgtattttatggtgtttaatttggatgttccgcctatatacgacgtctttatcatgtaacctctgat 31424666  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 823247 - 823097
Alignment:
Q  45 tttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt-tttgt 143  Q
    |||||||||||||||| ||||||||||||||||  ||||||||  || ||| ||  ||||||||||| ||||   ||| ||||| | ||  |||    ||    
T  823247 tttgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggt 823148  T
Q  144 gt-attttatggtgtttcatttgggtgttccacctatatacgacgccttta 193  Q
    ||  ||||||||||||| ||||||||||||| | |||||||||||||||||    
T  823147 gtctttttatggtgtttaatttgggtgttccccttatatacgacgccttta 823097  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 53279643 - 53279742
Alignment:
Q  61 atttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgtttt-gtgtattttatggtgttt 159  Q
    |||| ||||||||||||||| |||  | || || ||||| || |||||||| |||||||||||||||||| ||  |||||| |||| ||||||| |||||    
T  53279643 atttgggtggtgaagttggtcttgaaggttatt-ttcttatgagtgttgaaggtagatcttggttaggtggtgtgtgttttagtgttttttatgatgttt 53279741  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 48567441 - 48567302
Alignment:
Q  49 tgatggagtttgatttaggtggtgaagttggttttggtgattgttgttct-tttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtat 147  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||  |||||  ||| |    
T  48567441 tgatgaagtttgatttaggtggtgaagttggttttggtgattgttgttctctttaggtgtt-aaggtagatcttggttaggtgatgggtgtttaatgtct 48567343  T
Q  148 tttatggtgtttcatttgggtgttccacctatatacgacgc 188  Q
    |||||||||||   ||| |||||||| ||||||||||||||    
T  48567342 tttatggtgttgattttaggtgttccgcctatatacgacgc 48567302  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 23440230 - 23440152
Alignment:
Q  49 tgatggagtttgatttaggtggtgaagt-tggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 126  Q
    ||||||||||||||||||||||||||||  |||||| ||  |||||||| |||||||||||||| |||  |||||||||    
T  23440230 tgatggagtttgatttaggtggtgaagtggggttttagtagttgttgtttttttgggtgttgaaggtaagtcttggtta 23440152  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 9613225 - 9613087
Alignment:
Q  45 tttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtg 144  Q
    |||| |||| ||||||||||||||||||||||||| ||||||| |  ||||||| |||||||||||| |||| |||||||||| |||||  |||||||||    
T  9613225 tttgcgatgaagtttgatttaggtggtgaagttgggtttggtggtcattgttctattgggtgttgaaggtaggtcttggttagttgatgggtgttttgtg 9613126  T
Q  145 tattttatggtgtttcatttgggtgttccacctatatac 183  Q
    |||||||||||||||| ||| |||  ||| |||||||||    
T  9613125 tattttatggtgtttctttttggtcatccgcctatatac 9613087  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 22200277 - 22200334
Alignment:
Q  54 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 111  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22200277 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22200334  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 22235189 - 22235246
Alignment:
Q  54 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 111  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22235189 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22235246  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 27905761 - 27905809
Alignment:
Q  142 gtgtattttatggtgtttcatttgggtgttccacctatatacgacgcct 190  Q
    |||| |||||||||||||  |||  ||||||||||||||||||||||||    
T  27905761 gtgtcttttatggtgtttattttttgtgttccacctatatacgacgcct 27905809  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 1946042 - 1946186
Alignment:
Q  49 tgatggagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtat 147  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||  |||| ||||||| |||| | ||||||||||||||||||| |||||| |    
T  1946042 tgatggagtttgatttaggtggtgaagtggagttttggtggttgttgttcgcttggatgttgaaggtaggttttggttaggtgatgattgtattgtgtct 1946141  T
Q  148 tttatggtgtttcatttgggtgttccacctatatacgacgccttt 192  Q
    |||||| | |||| ||||| ||||||| |||||||| ||| ||||    
T  1946142 tttatgatatttcttttggatgttccatctatatacaacgtcttt 1946186  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 1945960 - 1945841
Alignment:
Q  54 gagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttat 152  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||||||| | |||||||||||||| |||| |||||| ||||||    
T  1945960 gagtttgatttaggtggtgaagtggagttttggtggttgttgttcgtttgagtgttgaaagtaggttttggttaggtgatggttgtattgtgtcttttat 1945861  T
Q  153 ggtgtttcatttgggtgttc 172  Q
    ||| |||| |||||||||||    
T  1945860 ggtatttcttttgggtgttc 1945841  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 15817202 - 15817096
Alignment:
Q  51 atggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt-tttgtgtattt 149  Q
    ||||||||||||||||||||||| |||  ||||| || ||||||||||   |||||||||||||||  ||| ||||||| |||  ||| || ||||||||    
T  15817202 atggagtttgatttaggtggtgatgtttcttttgatggttgttgttctcaagggtgttgaaagtaggacttcgttaggtaatg--tgtattagtgtattt 15817105  T
Q  150 tatggtgtt 158  Q
    |||||||||    
T  15817104 tatggtgtt 15817096  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 11199796 - 11199759
Alignment:
Q  50 gatggagtttgatttaggtggtgaagttggttttggtg 87  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11199796 gatggagtttgatttaggcggtgaagttggttttggtg 11199759  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 27740341 - 27740369
Alignment:
Q  165 gggtgttccacctatatacgacgccttta 193  Q
    |||||||||||||||||||||||||||||    
T  27740341 gggtgttccacctatatacgacgccttta 27740369  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 17819637 - 17819533
Alignment:
Q  27 tttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 126  Q
    |||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| | |||||||    
T  17819637 tttcgttttcagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggttg-tgttcttatgggtgttgaaggtaggttttggtta 17819539  T
Q  127 ggtgat 132  Q
    ||||||    
T  17819538 ggtgat 17819533  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 31503177 - 31503088
Alignment:
Q  44 gtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatg 133  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| || |||||||  || |||||||| |||| |||||| || ||||||    
T  31503177 gtttgcgatggagtttgatttaggtggcgaagttggttttggtggttcttgttctcatgcgtgttgaaggtaggtcttgggtatgtgatg 31503088  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 5221576 - 5221506
Alignment:
Q  121 tggttaggtgatgattgttttgt-gtattttatggtgtttcatttgggtgttccacctatatacgacgcct 190  Q
    |||||||||| ||  |||||||| || |||| ||||||||| |||||||||||| |||||||||| |||||    
T  5221576 tggttaggtggtgtgtgttttgttgtcttttttggtgtttcttttgggtgttccgcctatatacggcgcct 5221506  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 25184867 - 25184827
Alignment:
Q  147 ttttatggtgtttcatttgggtgttccacctatatacgacg 187  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  25184867 ttttatggtgtttacttcgggtgttccacctatatacgacg 25184827  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 26367823 - 26367678
Alignment:
Q  50 gatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttg-tgtatt 148  Q
    |||||||||||| ||||||||||||||||| |||| || ||||||||||  ||||||||||| | ||  ||| |||| ||||||  ||| ||| ||| ||    
T  26367823 gatggagtttgacttaggtggtgaagttggatttgatggttgttgttctcatgggtgttgaaggcaggacttagttaagtgatgtgtgtattgatgtctt 26367724  T
Q  149 ttatggtgtttcatttgggtgttccacctatatacgacgcctttat 194  Q
    | |||||||||  ||| ||||||||  ||||||||| || ||||||    
T  26367723 taatggtgttttgtttaggtgttccgtctatatacggcgtctttat 26367678  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 15126917 - 15126823
Alignment:
Q  39 tggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatg 133  Q
    ||||||||||  ||||||||||||||||||||||| |||| |||| ||| ||||||||||  ||||| ||||  ||||   ||||||||||||||    
T  15126917 tggctgtttgcaatggagtttgatttaggtggtgatgttgttttttgtggttgttgttctcatgggtattgatggtagggtttggttaggtgatg 15126823  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 2613682 - 2613623
Alignment:
Q  52 tggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 111  Q
    ||||||||||||||||||||||||||| |||| ||| | || | ||||||||||||||||    
T  2613682 tggagtttgatttaggtggtgaagttgatttttgtggtggtgggtcttttgggtgttgaa 2613623  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 21029892 - 21029952
Alignment:
Q  52 tggagtttgatttaggtggtgaagttgg-ttttggtgattgttgttcttttgggtgttgaa 111  Q
    ||||||||||||||| |||||||||||| |||||||| | || ||||||||||||||||||    
T  21029892 tggagtttgatttagctggtgaagttggtttttggtggtggtggttcttttgggtgttgaa 21029952  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 32316639 - 32316713
Alignment:
Q  52 tggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 126  Q
    ||||||||||| |||||| || |||| | |||||| |||||||||||| || |||||||| |||| |||||||||    
T  32316639 tggagtttgatctaggtgatgcagttaggtttggtaattgttgttcttatgtgtgttgaaggtaggtcttggtta 32316713  T

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