View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_95 (Length: 218)

Name: NF7739_low_95
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_95
NF7739_low_95
[»] chr7 (9 HSPs)
chr7 (20-195)||(24001989-24002164)
chr7 (20-195)||(24010173-24010348)
chr7 (20-200)||(24035544-24035721)
chr7 (20-200)||(15508539-15508716)
chr7 (76-194)||(26256621-26256739)
chr7 (133-200)||(15443867-15443934)
chr7 (76-191)||(26237460-26237575)
chr7 (76-200)||(26217813-26217937)
chr7 (65-126)||(23993361-23993422)
[»] chr5 (1 HSPs)
chr5 (80-162)||(23086632-23086714)
[»] chr3 (1 HSPs)
chr3 (76-197)||(36339961-36340082)
[»] chr4 (1 HSPs)
chr4 (76-124)||(10571452-10571500)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 24001989 - 24002164
Alignment:
Q  20 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24001989 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatc 24002088  T
Q  120 atacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccagttcttagggttttgatggac 195  Q
    |||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24002089 atacaagcagatgcagcagcctccgggttttaatgaggtaccattttttcagccagttcttagggttttgatggac 24002164  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 24010173 - 24010348
Alignment:
Q  20 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24010173 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgcgattgtttcacttgacctttcaacggaatc 24010272  T
Q  120 atacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccagttcttagggttttgatggac 195  Q
     ||||||||| ||| || ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  24010273 ctacaagcagttgcagctgcctccgggttttaatgaggttccattttttcagccggttcttagggttttgatggac 24010348  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 24035544 - 24035721
Alignment:
Q  20 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatc 119  Q
    ||||||| || || |||||||| |||||||||||||||||   ||||| || ||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  24035544 tgcatttgagtgggactattaactggttggctatgtacaa---gcctactactcatgttgtgcaatttgtgattgtttcacttgatctttcaacggaatc 24035640  T
Q  120 atacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccagttcttagggttttgatggactgtct 200  Q
    ||||||| || ||||||| ||||| || ||||| ||| |||||| |||||||||| |||||||||||||||||||| ||||    
T  24035641 atacaagaagttgctgcctcctccagggtttaacgagatgccatgttttcagccacttcttagggttttgatggacagtct 24035721  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 15508539 - 15508716
Alignment:
Q  20 tgcatttcagaggcactattaattggttggctatgtacaaccagcctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatc 119  Q
    ||||||| || |||||| |||| ||||||||||||||||| | |   |||| ||| |||||||||||| |||||||| ||||||||||||| || |||      
T  15508539 tgcatttgagtggcactgttaactggttggctatgtacaagctg---attactcatgttgagcaatttatgattgttgcacttgacctttcgacagaaaa 15508635  T
Q  120 atacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccagttcttagggttttgatggactgtct 200  Q
    |||||||| | | |||| |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||    
T  15508636 atacaagcggtttctgctgccttcgggttttaatgaggtgccatttcttgagccagttcttagggttctgatggattgtct 15508716  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 26256621 - 26256739
Alignment:
Q  76 gttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccag 175  Q
    |||||||||||||||||| |||| ||||| |||||||||||  ||||||||||| || ||| |||||  |||||| |||||||||||||| |||||||||    
T  26256621 gttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccatttgttcagccag 26256720  T
Q  176 ttcttagggttttgatgga 194  Q
    |||||| ||||||||||||    
T  26256721 ttcttaaggttttgatgga 26256739  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 15443867 - 15443934
Alignment:
Q  133 ctgccgcctccgggttttaatgaggtgccattttttcagccagttcttagggttttgatggactgtct 200  Q
    |||| |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||    
T  15443867 ctgctgccttcgggttttaatgaggtgccatttcttgagccagttcttagggttctgatggattgtct 15443934  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 26237460 - 26237575
Alignment:
Q  76 gttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccag 175  Q
    |||||||||||||||||| |||| ||||| ||||| ||  |  ||||||| ||| || ||  |||||  |||||| |||||||||||||| ||| |||||    
T  26237460 gttgagcaatttgtgattctttcgcttgatctttcgacaaagacatacaaacagttgttgttgcctcaaggttttgatgaggtgccatttattcggccag 26237559  T
Q  176 ttcttagggttttgat 191  Q
    |||||| |||||||||    
T  26237560 ttcttatggttttgat 26237575  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 26217813 - 26217937
Alignment:
Q  76 gttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccag 175  Q
    |||||| | ||||||||| |||| ||||| |||||||||||  ||||||||||| || ||| |||||  |||||| ||||| |  ||  | ||| |||||    
T  26217813 gttgaggattttgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgagattacacctgttcggccag 26217912  T
Q  176 ttcttagggttttgatggactgtct 200  Q
    |||||| |||||||||||| |||||    
T  26217913 ttcttatggttttgatggattgtct 26217937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 23993361 - 23993422
Alignment:
Q  65 ctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaag 126  Q
    |||||||||| | ||||||||||  |||| ||||||||||||||||||||||  ||||||||    
T  23993361 ctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaag 23993422  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 23086632 - 23086714
Alignment:
Q  80 agcaatttgtgattgtttcacttgacctttcaacggaatcatacaagcagctgctgccgcctccgggttttaatgaggtgcca 162  Q
    |||| ||||| |||||||| ||||| || ||||||||  ||||||||||| || ||| |||||  |||||| |||||||||||    
T  23086632 agcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgcca 23086714  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 36339961 - 36340082
Alignment:
Q  76 gttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaagcagctgctgccgcctccgggttttaatgaggtgccattttttcagccag 175  Q
    ||||||||||| ||||||||||| ||||| ||||| |||||  |||||| |||| |  |||  ||| | |||||||| ||||||||||   || |||||     
T  36339961 gttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagccat 36340060  T
Q  176 ttcttagggttttgatggactg 197  Q
     |||| ||||| ||||||||||    
T  36340061 ctcttcgggttctgatggactg 36340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 10571500 - 10571452
Alignment:
Q  76 gttgagcaatttgtgattgtttcacttgacctttcaacggaatcataca 124  Q
    |||||||||| |||||||||||||||||| || ||||| || |||||||    
T  10571500 gttgagcaatatgtgattgtttcacttgatctctcaactgagtcataca 10571452  T

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