View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_98 (Length: 208)
Name: NF7739_low_98
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_98 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 3367317 - 3367471
Alignment:
| Q |
17 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3367317 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagaaccaaataattcaaaaa |
3367416 |
T |
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| Q |
117 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
173 |
Q |
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| T |
3367417 |
caaagattaagccaccaaatatggtagattaaatggtaaac--aacaaaacacaata |
3367471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 54188229 - 54188383
Alignment:
| Q |
17 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54188229 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacacttaaagtcattggcagatctgcaaacagaaccaaataattcaaaaa |
54188328 |
T |
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| Q |
117 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
173 |
Q |
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| T |
54188329 |
caaagattaagccaccaaatatggtagattaaatggtaaac--aacaaaacacaata |
54188383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 8570939 - 8570795
Alignment:
| Q |
17 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
116 |
Q |
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| T |
8570939 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctg----------caaataattcaaaaa |
8570850 |
T |
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| Q |
117 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
173 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
8570849 |
caaagattaagccacctaatatggtagattaaatggtaaac--aacaaaacacaata |
8570795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 5992093 - 5992046
Alignment:
| Q |
29 |
agatgccactgttcccatcttggtgcaagccatcaatcacgcttgaag |
76 |
Q |
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|||||| |||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
5992093 |
agatgctactgctccgatcttggtgcaagccatcaatcacacttgaag |
5992046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 28696899 - 28696755
Alignment:
| Q |
17 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
28696899 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctg----------caaataattcaaaaa |
28696810 |
T |
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| Q |
117 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
173 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
28696809 |
caaagattaagccacctaatatggtagattaaatggtaaac--aacaaaacacaata |
28696755 |
T |
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