View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7740_high_2 (Length: 417)
Name: NF7740_high_2
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28895778 - 28895579
Alignment:
| Q |
1 |
ggcatgcaagtcccactcacaaaaatctgttatagtaatttttgtcttattcctttctctttctttattttcaactcatttcaaatgcatattcacactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28895778 |
ggcatgcaagtcccactcacaaaaatctgttatagtaatttttgtcttattcctttctctttctttattttcaactcatttcagatgcatattcacactc |
28895679 |
T |
|
| Q |
101 |
actcccttgtcctctccaacca---tcatgcatttctttctctctaaaaaactcttcgtatatttaagggagtaaatttggatgatgaaaattcacattc |
197 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28895678 |
actcccttgtcctctccaaccatcatcatgcatttctttctctctaaaaaactcttcgtatatttaagggagtaaatttggatgatgaaaattcacattc |
28895579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 208 - 393
Target Start/End: Complemental strand, 28895552 - 28895352
Alignment:
| Q |
208 |
taataactccctcaagtcgtggtgtatgtacgtacctttcacacaagaaaaaagtttgttacaatacaaattgtcttattcgatcgcttcacactccaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28895552 |
taataactccctcaagtcgtggtgtatgtacgtacctttcacacaagaaaaaagtttgttacaatacaaattgtcttattcgatcgcttcacactccaaa |
28895453 |
T |
|
| Q |
308 |
cgcaccactct---------------ctctatctctcaaattgaaataaatttacaccttcgtagtagtaaaacctttaaacgttcactacaaggtgctt |
392 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28895452 |
cgcaccactctctctttttttcctctctctctctctcaaattgaaatatatttacaccttcgtagtagtaaaacctttaaacgttcactacaaggtgctt |
28895353 |
T |
|
| Q |
393 |
a |
393 |
Q |
| |
|
| |
|
|
| T |
28895352 |
a |
28895352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University