View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7740_high_3 (Length: 249)
Name: NF7740_high_3
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25619408 - 25619172
Alignment:
| Q |
1 |
aaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagtt |
100 |
Q |
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| T |
25619408 |
aaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagtt |
25619309 |
T |
|
| Q |
101 |
taacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25619308 |
taacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataa |
25619209 |
T |
|
| Q |
201 |
agtttatgatttggattatatgctgttattttgcttc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25619208 |
agtttatgatttggattatatgctgttattttgcttc |
25619172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 25632982 - 25632764
Alignment:
| Q |
20 |
aatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagtttaa-cacagaaatgagcga |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| || | ||| | || |
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| T |
25632982 |
aatcaattttagcacacaattgtcgtcagatttgatcaaagtatttgtttaaatcattttctatatgcatcatcttaagtttactcaaaaaaaaaaaaga |
25632883 |
T |
|
| Q |
119 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataaagtttatgatttggatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
25632882 |
gggaataaatttactcgatttaagaaccgatgactatttgttggcttgtgactagataggtctacttatgaaaacataaataagtttatcaggtggatta |
25632783 |
T |
|
| Q |
219 |
tatgctgttattttgcttc |
237 |
Q |
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||||||||||||||||||| |
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| T |
25632782 |
tatgctgttattttgcttc |
25632764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 25643077 - 25642960
Alignment:
| Q |
119 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataaagtttatgatttggatta |
218 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||| | |||||||| | ||||||| |
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| T |
25643077 |
ataaataaatttacacgatttaagaaccgatgcctatcagttggcttggaactagataggtctacttgtgaacacatatttaagtttatcaggtggatta |
25642978 |
T |
|
| Q |
219 |
tatgctgttattttgcttc |
237 |
Q |
| |
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||| ||||||||||||||| |
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| T |
25642977 |
tat-ctgttattttgcttc |
25642960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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