View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7740_high_4 (Length: 237)
Name: NF7740_high_4
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25619620 - 25619846
Alignment:
| Q |
1 |
atcattcgtggaatttgtctcgggagaactagcatttttctttagaattgattcttatgtacaaatttactgtccaagtct--ttaatattaatatggtc |
98 |
Q |
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| T |
25619620 |
atcattcgtggaatttgtctcaggagaactagcattttcctttagaattgattcttatgtacaaatttgctgtccaagtctctttaatattaatatggtc |
25619719 |
T |
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| Q |
99 |
aaacataaagcattttactttctcctcatatttaaccacgatcaattttataaaatcaattcatgcaaaatttattgggatgttacgaaatcgctacttg |
198 |
Q |
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| T |
25619720 |
aaacataaagcattttactttctcctcatatttaaccacgatcaattttataaaatcaattcatgcaaaatttattgggatgttacgaaatcgctacttg |
25619819 |
T |
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| Q |
199 |
tacatagtacca--ctagtgcacatgg |
223 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
25619820 |
tacatagtaccactctagtgcacatgg |
25619846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 25624520 - 25624654
Alignment:
| Q |
42 |
ttagaattgattcttatgtacaaatttactgtccaagtct--ttaatattaatatggtcaaacataaagcattttactttctcctcatatttaaccacga |
139 |
Q |
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| T |
25624520 |
ttagaattgattcttatgtacaaatttagtgtccaaatctctttgatattaatatagtcaaacataaagcattttactttctcctcatatttaaccatta |
25624619 |
T |
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| Q |
140 |
tcaattttataaaatcaattcatgcaaaatttatt |
174 |
Q |
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| T |
25624620 |
tcaattttataaaatcaattcattcataatttatt |
25624654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 25627651 - 25627706
Alignment:
| Q |
119 |
tctcctcatatttaaccacgatcaattttataaaatcaattcatgcaaaatttatt |
174 |
Q |
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| T |
25627651 |
tctcctcatatttaaccacaatcaattttataaaatcaatttagacaaaatttatt |
25627706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 25627777 - 25627812
Alignment:
| Q |
176 |
ggatgttacgaaatcgctacttgtacatagtaccac |
211 |
Q |
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| T |
25627777 |
ggatgttaccaaatcgctacttgtacatagtaccac |
25627812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 25633179 - 25633230
Alignment:
| Q |
86 |
tattaatatggtcaaacataaa-gcattttactttctcctcatatttaacca |
136 |
Q |
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| T |
25633179 |
tattaatatagtcaaacataaaagcattttactttcttctcctatttaacca |
25633230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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