View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7740_low_1 (Length: 1006)
Name: NF7740_low_1
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 893; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 22 - 988
Target Start/End: Complemental strand, 45976059 - 45975073
Alignment:
| Q |
22 |
cacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976059 |
cacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacaca |
45975960 |
T |
|
| Q |
122 |
ctcagaatagcaacaacataataaggaaaaaagtga---ttatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975959 |
ctcagaatagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgt |
45975860 |
T |
|
| Q |
219 |
tcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcacca |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975859 |
tcaacaaacaccaaggtgttctctgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcacca |
45975760 |
T |
|
| Q |
319 |
cctccatagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975759 |
cctccatagatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacgg |
45975660 |
T |
|
| Q |
419 |
attcatccccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975659 |
attcatccccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaa |
45975560 |
T |
|
| Q |
519 |
atattattgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcat |
618 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975559 |
atattaatgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcat |
45975460 |
T |
|
| Q |
619 |
ttgtaaatttgattgcatcagcaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcacaaatcacaatcg |
718 |
Q |
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| T |
45975459 |
ttgtaaatttgattgcatcaacaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcacaaatcacaatcg |
45975360 |
T |
|
| Q |
719 |
ccatgtcgttgcagattttgaagtctatgcatagtttaac-----------------cgcgatttaaaaccattggtgcgatggtgagacgtagttaaaa |
801 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45975359 |
ccatgtcgttgcagattttgaagtctatgcatagtttaaccgcgtaagagccacaaccgcgatttaaaaccattggtgcgatggtgagatgtagttaaaa |
45975260 |
T |
|
| Q |
802 |
aatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctcc |
901 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975259 |
aatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctcc |
45975160 |
T |
|
| Q |
902 |
gacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaacccgtct |
988 |
Q |
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| T |
45975159 |
gacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaacccgtct |
45975073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 28052383 - 28052450
Alignment:
| Q |
30 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaa |
97 |
Q |
| |
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| T |
28052383 |
tgaaaattcctcaaccgcttactaaccatcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 28052879 - 28052935
Alignment:
| Q |
392 |
gtcattgcacatcacccacagatacggattcatccccagtatgttgtaaaatccatc |
448 |
Q |
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| T |
28052879 |
gtcattacacataacccacaaatacggattcattcccaatatgttataaaatccatc |
28052935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 28052682 - 28052763
Alignment:
| Q |
198 |
gcaacaagttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagta |
279 |
Q |
| |
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|||||||||||||| || | |||||| | |||||||| ||||| |||| | ||||||||| ||||||||||| ||||||| |
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| T |
28052682 |
gcaacaagttttccaagcttttcaacgagcaccaaggcattctcagaagcagaatacaactcttgagctttatcttgaagta |
28052763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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