View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7740_low_3 (Length: 455)
Name: NF7740_low_3
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 178 - 442
Target Start/End: Original strand, 37196620 - 37196884
Alignment:
| Q |
178 |
tatctatcaaatttgttgggtccaaaaatacacatttcctcactcaaatggcctctgtacgtttgtttttgttagctattttgatcattgtctcactttc |
277 |
Q |
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| T |
37196620 |
tatctatcaaatttgttgggtccaaaaatacacatttcctcactcaaatggcctctgtccgtttgtttttgttagctattttgatcattgtgtcactttc |
37196719 |
T |
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| Q |
278 |
cagcattgacaatgtccaaggtggtgggactagaaaacttttgacacaaacatttcctgatttgggcaaaattccagggctagagtttcctcctttccca |
377 |
Q |
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| T |
37196720 |
cagcattgacaatgtccaaggtggtgggactagaaaacttttgacacaaacatttcctgatttgggcaaaattccagggctagagtttcctcctttccca |
37196819 |
T |
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| Q |
378 |
ccagtgactgaatggccagagtacaggttgcctccacccattttcaatattcctgacttcttctc |
442 |
Q |
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| T |
37196820 |
ccagtgactgaatggccagagtacaggttgcctccacccattttcaatattcctgacttcttctc |
37196884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 37196431 - 37196598
Alignment:
| Q |
14 |
caattaactctatgtacgaattaagcattatattgttgtgaagaatattcaaatatttctctttgaattaactcatgtacgaatatggtttaagttgtac |
113 |
Q |
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| T |
37196431 |
caattaactccatgtacgaattaagcatt-----gttgtgaagaatattcaaatatttctctttgaattaactcatgtacgaatatggtttaagttgtac |
37196525 |
T |
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| Q |
114 |
tataaaaacacaagaaccaactcttatgttgtcacttgtcttcactcttctcccttactgcaattatctatca |
186 |
Q |
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| T |
37196526 |
tataaaaacacaagaaccaactcttatgttgtcacttgtcttcactcttctcccttactacaattatctatca |
37196598 |
T |
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