View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7740_low_4 (Length: 452)
Name: NF7740_low_4
Description: NF7740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7740_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 5366348 - 5365920
Alignment:
| Q |
18 |
aatctctcaactccaccaccagcagaacaacaacatcaagtagctctcgatcctcaaaacaaaactatcaccaatattacaatccacaagaagttgaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366348 |
aatctctcaactccaccaccagcagaacaacaacatcaagtagctctcgatcctcaaaacaaaactatcaccaatattacaatccacaagaagttgaaga |
5366249 |
T |
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| Q |
118 |
agaatgcttcaactttttcatggatgaagaagacctttcctcatcttcttccaaacactactatccttataatcaacctcaaacctcaaatactattact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366248 |
agaatgcttcaactttttcatggatgaagaagacctttcctcatcttcttccaaacactactatccttataatcaacctcaaacctcaaatactattact |
5366149 |
T |
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| Q |
218 |
acaaacacccccacaacatcactcccannnnnnnnnnnaacagcggatttcaccttcgaattaaccggaaagtgggccaacaacatcctcctcgaaacag |
317 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5366148 |
acaaacacccccacaacatcactcacaccccctccaccaacagctgatttcaccttcgaattaaccggaaggtgggccaacaacatcctcctcgaaacag |
5366049 |
T |
|
| Q |
318 |
cacgagccatagcagnnnnnnncagcactcgtttacaacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagc |
417 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366048 |
cacgagccatagcagaaaaaaacagcactcgtttacaacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagc |
5365949 |
T |
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| Q |
418 |
tgcatattttctccaagccttcttctctc |
446 |
Q |
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| T |
5365948 |
tgcatattttctccaagccttattctctc |
5365920 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 39987321 - 39987382
Alignment:
| Q |
353 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
414 |
Q |
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| T |
39987321 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
39987382 |
T |
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