View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_high_1 (Length: 856)

Name: NF7741_high_1
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_high_1
NF7741_high_1
[»] chr5 (5 HSPs)
chr5 (307-669)||(43446493-43446856)
chr5 (92-306)||(43447512-43447726)
chr5 (736-820)||(43446345-43446429)
chr5 (1-76)||(43447712-43447793)
chr5 (149-210)||(22772891-22772952)
[»] chr8 (4 HSPs)
chr8 (92-460)||(43592860-43593232)
chr8 (464-669)||(43593440-43593645)
chr8 (739-843)||(43593712-43593816)
chr8 (22-76)||(43592820-43592874)
[»] chr3 (6 HSPs)
chr3 (92-304)||(47862843-47863056)
chr3 (308-460)||(47862637-47862789)
chr3 (464-579)||(47861551-47861666)
chr3 (739-843)||(47861334-47861439)
chr3 (611-669)||(47861495-47861553)
chr3 (22-76)||(47863042-47863097)
[»] chr7 (7 HSPs)
chr7 (470-669)||(46571354-46571553)
chr7 (464-645)||(9182305-9182486)
chr7 (148-321)||(9181970-9182140)
chr7 (741-843)||(46571624-46571726)
chr7 (736-843)||(9182604-9182711)
chr7 (22-76)||(9181436-9181490)
chr7 (92-147)||(9181476-9181531)
[»] chr4 (2 HSPs)
chr4 (220-414)||(40904106-40904289)
chr4 (170-235)||(40904031-40904095)
[»] chr6 (8 HSPs)
chr6 (501-645)||(28364722-28364866)
chr6 (92-186)||(28323640-28323734)
chr6 (736-838)||(28364496-28364599)
chr6 (385-460)||(28365291-28365366)
chr6 (246-337)||(28365364-28365452)
chr6 (22-76)||(28323720-28323774)
chr6 (206-246)||(28323599-28323639)
chr6 (630-669)||(28364663-28364702)
[»] scaffold0038 (3 HSPs)
scaffold0038 (92-186)||(114955-115049)
scaffold0038 (22-76)||(115035-115089)
scaffold0038 (206-246)||(114914-114954)
[»] chr1 (1 HSPs)
chr1 (139-203)||(52336057-52336121)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 307 - 669
Target Start/End: Complemental strand, 43446856 - 43446493
Alignment:
Q  307 gtatataagaactttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagttt-aagtatgagatatcctttgaaatata 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43446856 gtatataagaactttggttgcagtcgtttgattataatgttattacatatcacactatcctcattataagttttaagtatgagatatcctttgaaatata 43446757  T
Q  406 atgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgttatcaatgatttttcatttatttgttaggatttattagggttaaat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43446756 atgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttattaatcgttatcaatgatttttcatttatttgttaggacttattagggttaaat 43446657  T
Q  506 taactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaatatttt 605  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446656 aaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaatatttt 43446557  T
Q  606 caataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 669  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446556 caataagacacatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 43446493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 92 - 306
Target Start/End: Complemental strand, 43447726 - 43447512
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43447726 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttaagtatcaagagcttaatttt 43447627  T
Q  192 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 291  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43447626 gtatgaattacccttatatgtatagaatcaaagaaaagttaattgatatatgaattacttaccaattcacttaattgatattttttcttcatattctatt 43447527  T
Q  292 ttgctttcttacata 306  Q
    |||||||||||||||    
T  43447526 ttgctttcttacata 43447512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 736 - 820
Target Start/End: Complemental strand, 43446429 - 43446345
Alignment:
Q  736 atgacaaaattcatggtttatcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatat 820  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  43446429 atgacaaaattcatggtttatcatttttcatttttagacccgggttggtactttaataaatcacacgtaacctttcttgctatat 43446345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43447793 - 43447712
Alignment:
Q  1 tatgggtgaaactagctatcatat------actttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 76  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43447793 tatgggtgaaactagctatcatattcttatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 43447712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 22772891 - 22772952
Alignment:
Q  149 gtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatat 210  Q
    |||||||| ||||||||||||| |||||  ||||||| ||||||||||||||||| ||||||    
T  22772891 gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat 22772952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 92 - 460
Target Start/End: Original strand, 43592860 - 43593232
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 191  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43592860 ctaaatattagatgtattggttttttcctaaccttatggatataccattatatatttgtagatacgttactattcatttatgtatcaagagcttaatttt 43592959  T
Q  192 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43592960 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctatt 43593059  T
Q  292 ttgctttcttacatagtatataagaactttggttgcagtcgtttgattataatgttattacatattacactat----cctcattataagtttaagtatga 387  Q
    | || || |||||||   ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||    
T  43593060 tcgcattgttacatatattataagaactttggtagaagtcgtttgattataatgttattacatatcacactatcctccctcattataagtttaagtatga 43593159  T
Q  388 gatatcctttgaaatataatgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 460  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43593160 gatatcctttaaaatataatgtgcaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 43593232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 464 - 669
Target Start/End: Original strand, 43593440 - 43593645
Alignment:
Q  464 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 563  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  43593440 aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatacatgtatgtattatgtagagttgatctacatagtttg 43593539  T
Q  564 aatttgatggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgat 663  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43593540 aatttaatggtgtagattctcctctccaaaacaaaatattttccgtaagagacatgaatcaaacttaccattgaaccaatttattattgggataattgat 43593639  T
Q  664 tgtttg 669  Q
    | ||||    
T  43593640 tttttg 43593645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 739 - 843
Target Start/End: Original strand, 43593712 - 43593816
Alignment:
Q  739 acaaaattcatggtttatcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatatagtttcattttcgtgcac 838  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  43593712 acaaaattcatggtttatcatttatcatttttagacccggattggtactttaatcaataacacgtaaccttttttgctatatggtttcattttcgtgcac 43593811  T
Q  839 aggtt 843  Q
     ||||    
T  43593812 gggtt 43593816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 43592820 - 43592874
Alignment:
Q  22 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 76  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  43592820 tatactttgatatgccataatcttttgatgtgttgtgaaactaaatattagatgt 43592874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 92 - 304
Target Start/End: Complemental strand, 47863056 - 47862843
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagcttaatttt 191  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47863056 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatccgttactattcatttatgtatcaagagcttaatttt 47862957  T
Q  192 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatatt-ttttcttcatattctat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47862956 gtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttttttcatattctat 47862857  T
Q  291 tttgctttcttaca 304  Q
    ||||| || |||||    
T  47862856 tttgcattgttaca 47862843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 308 - 460
Target Start/End: Complemental strand, 47862789 - 47862637
Alignment:
Q  308 tatataagaactttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagtttaagtatgagatatcctttgaaatataat 407  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47862789 tatataagaactttggttacagtcgtttgattataatgttattacatatcacactatcctcattataagtttaagtatgagatatcctttaaaatataat 47862690  T
Q  408 gtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 460  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  47862689 gtgcaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 47862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 464 - 579
Target Start/End: Complemental strand, 47861666 - 47861551
Alignment:
Q  464 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 563  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||    
T  47861666 aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctacgttacgcatgtatgtattatgtaaagttgatctacattgtttg 47861567  T
Q  564 aatttgatggtgtaga 579  Q
    ||||||||||||||||    
T  47861566 aatttgatggtgtaga 47861551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 739 - 843
Target Start/End: Complemental strand, 47861439 - 47861334
Alignment:
Q  739 acaaaattcatggtttatcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatatagtttcattttc-gtgca 837  Q
    ||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||    
T  47861439 acaaaattcatggtttatcatttattatttttagacccgggttggtactttaatcaataacatgtaacctttcttgctatatggtttcattttctgtgca 47861340  T
Q  838 caggtt 843  Q
    ||||||    
T  47861339 caggtt 47861334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 47861553 - 47861495
Alignment:
Q  611 agaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 669  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47861553 agagacatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 47861495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 47863097 - 47863042
Alignment:
Q  22 tatactttgatatgccataatcttttgatgtgtt-atgaaactaaatattatatgt 76  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  47863097 tatactttaatatgccataatcttttgatgtgttaatgaaactaaatattagatgt 47863042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 470 - 669
Target Start/End: Original strand, 46571354 - 46571553
Alignment:
Q  470 ttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttg 569  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  46571354 ttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatgcatgtatgtattacgtagagttgttctacattgtttgaatttg 46571453  T
Q  570 atggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46571454 atggtgtagattctcctctccaaaacaaaatattttcaataagagacataaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 46571553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 464 - 645
Target Start/End: Original strand, 9182305 - 9182486
Alignment:
Q  464 aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg 563  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  9182305 aatgatttttcatttatttgttaggacttattaggattaaattaactaggttgctatgttatgaatgtatgtattatgtagagtttatctacattgtttg 9182404  T
Q  564 aatttgatggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaattt 645  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  9182405 aatttgatggtgtagattctcctctcaaaaataaaatattttcaataagagacatgaatcaaacttaccattaaaccaattt 9182486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 148 - 321
Target Start/End: Original strand, 9181970 - 9182140
Alignment:
Q  148 tgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaatt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9181970 tgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaattgatataagaatt 9182069  T
Q  248 acttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaacttt 321  Q
    | ||||||||||||||| ||||||||||||||||||||||||||| || || |||||   ||||||||||||||    
T  9182070 agttaccaattcacttagttgatattttttcttcatattctatttcgcattgttaca---tatataagaacttt 9182140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 741 - 843
Target Start/End: Original strand, 46571624 - 46571726
Alignment:
Q  741 aaaattcatggtttatcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatatagtttcattttcgtgcacag 840  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||||||||||||||| |||||||||||||||||||  ||||||| |||| ||| |    
T  46571624 aaaattcatggtttatcatttttaaattttagacccgggttggtactttaatcaatcacatgtaacctttcttgctatatgttttcattatcgtacacgg 46571723  T
Q  841 gtt 843  Q
    |||    
T  46571724 gtt 46571726  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 736 - 843
Target Start/End: Original strand, 9182604 - 9182711
Alignment:
Q  736 atgacaaaattcatggtttatcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatatagtttcattttcgtg 835  Q
    ||||||||||||||| |||||||||||| |||||  |||| |  ||||||||||||||||||||||||||||||||||||| |||   |||||||| |||    
T  9182604 atgacaaaattcatgatttatcatttttaattttaggacctgggttggtactttaatcaatcacacgtaacctttcttgctgtatgtgttcattttagtg 9182703  T
Q  836 cacaggtt 843  Q
    ||| ||||    
T  9182704 cacgggtt 9182711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 9181436 - 9181490
Alignment:
Q  22 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9181436 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattagatgt 9181490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 9181476 - 9181531
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatt 147  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  9181476 ctaaatattagatgtattggttttttcctatccttatgtgtataccattatatatt 9181531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 220 - 414
Target Start/End: Original strand, 40904106 - 40904289
Alignment:
Q  220 caaagaaaagttaattgatataagaattacttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaact 319  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |           |||||||||||    
T  40904106 caaagaaaagttaattgatataagaattacttatcaattcacttaattgatattttttcttcatcttctattttgcat-----------atataagaact 40904194  T
Q  320 ttggttgcagtcgtttgattataatgttattacatattacactatcctcattataagtttaagtatgagatatcctttgaaatataatgtgcaaa 414  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40904195 ttggttgcagtcgtttgattataatgttattacatatcacgctatcctcattataagtttaagtatgagatatcctttgaaatataatgtgcaaa 40904289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 40904031 - 40904095
Alignment:
Q  170 tatgtatcaagagcttaattttgtatgaattatccttatatgtatagaatcaaagaaaagttaatt 235  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40904031 tatgtatcaagagcttaattttgtatgaattat-cttatatgtatagaatcaaagaaaagttaatt 40904095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 501 - 645
Target Start/End: Complemental strand, 28364866 - 28364722
Alignment:
Q  501 taaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaat 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  28364866 taaattaactaggttgctatgttatgcatgtatgtattatgtagagttgatctacattgtttgaatttgatgatgtagattctcctctccaaaacataat 28364767  T
Q  601 attttcaataagaggcatgaatcaaacttaccattgaaccaattt 645  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  28364766 attttcaataagagacatgaatcaaacttaccattgaaccaattt 28364722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 28323734 - 28323640
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 186  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28323734 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 28323640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 736 - 838
Target Start/End: Complemental strand, 28364599 - 28364496
Alignment:
Q  736 atgacaaaattcatggttta-tcatttttcatttttagacccgatttggtactttaatcaatcacacgtaacctttcttgctatatagtttcattttcgt 834  Q
    |||||||||||||||||||  |||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  28364599 atgacaaaattcatggttttctcattttttatttttagacccgggttggtactttaatcaatcacatataacctttcttgctatatggattcattttcgt 28364500  T
Q  835 gcac 838  Q
    ||||    
T  28364499 gcac 28364496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 385 - 460
Target Start/End: Complemental strand, 28365366 - 28365291
Alignment:
Q  385 tgagatatcctttgaaatataatgtgcaaaccaacaaacaaataaaatgaattatgcttatcacttatttatcgtt 460  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28365366 tgagatatcctttaaaatataatgtgaaaaccaacaaacaaataaaatgaattatccttattacttatttatcgtt 28365291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 337
Target Start/End: Complemental strand, 28365452 - 28365364
Alignment:
Q  246 ttacttaccaattcacttaattgatattttttcttcatattctattttgctttcttacatagtatataagaactttggttgcagtcgtttga 337  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| || || |||||   ||||||||||||||||||| ||||||||||    
T  28365452 ttacttaccaattcacttaattaatattttttcttcgtattctatttcgcattgttaca---tatataagaactttggttgtagtcgtttga 28365364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 28323774 - 28323720
Alignment:
Q  22 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28323774 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattagatgt 28323720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 28323639 - 28323599
Alignment:
Q  206 tatatgtatagaatcaaagaaaagttaattgatataagaat 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28323639 tatatgtatagaatcaaagaaaagttaattgatataagaat 28323599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 630 - 669
Target Start/End: Complemental strand, 28364702 - 28364663
Alignment:
Q  630 accattgaaccaatttattattgggataattgattgtttg 669  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28364702 accattgaactaatttattattgggataattgattgtttg 28364663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 115049 - 114955
Alignment:
Q  92 ctaaatattatatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 186  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115049 ctaaatattagatgtattggttttttcctaaccttatgggtataccattatatatttgtggatacgttactattcatttatgtatcaagagctta 114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 115089 - 115035
Alignment:
Q  22 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattatatgt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  115089 tatactttgatatgccataatcttttgatgtgttatgaaactaaatattagatgt 115035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 114954 - 114914
Alignment:
Q  206 tatatgtatagaatcaaagaaaagttaattgatataagaat 246  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  114954 tatatgtatagaatcaaagaaaagttaattgatataagaat 114914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 52336057 - 52336121
Alignment:
Q  139 ttatatatttgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52336057 ttatatatttgtggatacgttactattcatttatgtatcaagagcttaattttgtatgaactatc 52336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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