View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_12 (Length: 507)
Name: NF7741_high_12
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 54793484 - 54793010
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793484 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
54793385 |
T |
|
| Q |
113 |
atctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatatagaattn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793384 |
atctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatatagaatta |
54793285 |
T |
|
| Q |
213 |
nnnnnnnnntgagataaagtaaatgagatcatacctttatcaactctttacgagcttcctgcagttcatcattgctctggcgctccttgacaatgagggt |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793284 |
aaaaaaa--tgagataaagtaaatgagatcatacctttatcaactctttacgagcttcctgcagttcatcattgctctggcgctccttgacaatgagggt |
54793187 |
T |
|
| Q |
313 |
ttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtactcatttcttccannnnnnncttaatagcttcatcatcttgatct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54793186 |
ttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtactcatttcttccatttttttcttaatagcttcatcatcttgatct |
54793087 |
T |
|
| Q |
413 |
ccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaatttttgcttggcatctagttg |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793086 |
ccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaatttttgcttggcatctagttg |
54793010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 52286156 - 52285678
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtactttataacttagcatgaagaa |
112 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||| ||||| ||||||| |
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| T |
52286156 |
aatatactcacagcagaacaacagaatatcaaaattcttatttcctaaagaaaggtggagacaatcttcacgagg-tactttataagttagcgtgaagaa |
52286058 |
T |
|
| Q |
113 |
atctatgcaacttgtt----agttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatataga |
208 |
Q |
| |
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|| |||||| |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
52286057 |
atatatgcaccttgtttgttagttggttatcgttaagaatacaataagataaaggttaaaaggatgcaagaa-tatgagtaacatttcttttgatataga |
52285959 |
T |
|
| Q |
209 |
attnnnnnnnnnntgagataaagtaaatgagatcatacctttatcaactctttacgagcttcctgcagttcatcattgctctggcgctccttgacaatga |
308 |
Q |
| |
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||| |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
52285958 |
attaaaataaaatcgagataaagtaaatgagatcatacggctattaactctttacgagcttcctgtagttcatcattgctctggcgctccttgtcaatga |
52285859 |
T |
|
| Q |
309 |
gggtttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtactcatttcttccannnnnnncttaatagcttcatcatcttg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
52285858 |
gggtttgattcatagactccatatcctccaaactttctattttgtctgccaattcagtactcatttcttccatttttttcttaacagcttcatcatcttg |
52285759 |
T |
|
| Q |
409 |
atctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaatttttgcttggcatctagttg |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52285758 |
atctccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaatttttgcttggcatctagttg |
52285678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 801344 - 800870
Alignment:
| Q |
13 |
aatatattcacagcagaacaacaaaatatcaaaattcttatttcctaaagaaaggtagagatgatcttcacgcgggtacttt-ataacttagcatgaaga |
111 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| |||||||||||||||| |||| ||||| ||||||| || |||||||| | | | ||||||||||| |
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|
| T |
801344 |
aatatatttacagcagaacaatgaaatataaaaaatcttatttcctaaagagaggtggagataatcttcatgccggtacttttacagcatagcatgaaga |
801245 |
T |
|
| Q |
112 |
aatctatgcaacttgttagttggttatagttaagaatacaagaagataaaggttaaaaggatgcaacaagtatgagtaacatttctttttatatagaatt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| || | |
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|
| T |
801244 |
aatctatgcaccttgttagttggttatctttaagaatacaagaagataaaggttcaaaggatgcaacaagtgtga--aacatttctttttatata-aagt |
801148 |
T |
|
| Q |
212 |
nnnnnnnnnntgagataaagtaaatgagatcatacctttatcaactctttacgagcttcctgcagttcatcattgctctggcgctccttgacaatgaggg |
311 |
Q |
| |
|
||| | |||||||||||||| ||| | ||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
801147 |
taaaaataattgaaaggaagtaaatgagatcgtacttctattaattctttacgagcttcctgtagttcatcattgctttggcgctccttgacaatgaggg |
801048 |
T |
|
| Q |
312 |
tttgattcatagactccatatcctccaagctttctattttgtctgccaattcagtactcatttcttccannnnnnncttaatagcttcatcatcttgatc |
411 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||| || | | |||| ||||||| ||| |||||| |||||||||||| |
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|
| T |
801047 |
ttgaattcatagactccatatcctccaagctttctattttgtcttccaactccgaattcatctcttccatttttttcttgatagctgtatcatcttgatc |
800948 |
T |
|
| Q |
412 |
tccaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctaatttttgcttggcatctagttg |
489 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||| ||||| |||||||| |||||||| |||||||||||||| |
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|
| T |
800947 |
tccaagatgtttcataacttgcagtttccctctgagttcttcaatttccatttccaatttttgtttggcatctagttg |
800870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 54776055 - 54776153
Alignment:
| Q |
395 |
gcttcatcatcttgatctccaagatgtttcataacttgcaatttcccttttagttcctcaatctcca----tttctaatttttgcttggcatctagttg |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
54776055 |
gcttcatcatcttgatcttcaagatgtttcataacttgcaatttcccttttagttcctcaatctccatttctttctaatttttgtttggcatctagttg |
54776153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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