View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_15 (Length: 479)
Name: NF7741_high_15
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 26219028 - 26218583
Alignment:
| Q |
19 |
gcaccaaactttaatgtttcgtttttaccaaatgctccacatcagaatcatgaaagttgcgggttgtaagccattagaagcctgtatgatagatgctata |
118 |
Q |
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| T |
26219028 |
gcaccaaactttaatgtttcgtttttaccaaatgctccacatcagaatcatgaaagttgcgggttgtaagccattagaagcctgtatgatagatgctata |
26218929 |
T |
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| Q |
119 |
atatttgggaggtttgtatgttgctgttgatgaagttggatgatatcccaacactcaaaagccttcaaacttgttctgcattgtcgcaccaaaagaaaag |
218 |
Q |
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| T |
26218928 |
atatttgggaggtttgtatgttgctgttgatgaagttggatgatatcccaacactcaaaagacttcaaacttgttctgcattgtcgcaccataagaaaag |
26218829 |
T |
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| Q |
219 |
atgaagataattatcttcaatctcgcccgcacatagaacacaattgtttgtataagatactcattttttgatttagatgaaatcgagtggggatgcaatt |
318 |
Q |
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| T |
26218828 |
atgaag---attatcttcaatctcgcccgcacatagaacacaattgtttgtataagatactcattttttgatttagatgaaatcgagtggggatgcaatt |
26218732 |
T |
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| Q |
319 |
tctgcacaaacgccacacaattttattaacttcgggtggta--tttttctcgccaaatgaattgccaactcccggagtctggatgttcgagctactagca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
26218731 |
tctgcacaaacgccacacaattttattaacttcgggtggtatttttttctcgccaaatgaattgccaactcccggagtttggatgttcgagctaccagca |
26218632 |
T |
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| Q |
417 |
cccatacaaatacaggaacgatatgtgtttttaacaaagaaatttccat |
465 |
Q |
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| T |
26218631 |
cccatacaaatacaggaatgatatgtgtttttaacaaagaaatttccat |
26218583 |
T |
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