View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_17 (Length: 450)
Name: NF7741_high_17
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 3058683 - 3059098
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3058683 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
3058782 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3058783 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
3058882 |
T |
|
| Q |
217 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3058883 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttagagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
3058982 |
T |
|
| Q |
317 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058983 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
3059082 |
T |
|
| Q |
417 |
aagtgatgaaagttgt |
432 |
Q |
| |
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|||| ||||||||||| |
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|
| T |
3059083 |
aagttatgaaagttgt |
3059098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 17443517 - 17443102
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17443517 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
17443418 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17443417 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
17443318 |
T |
|
| Q |
217 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17443317 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
17443218 |
T |
|
| Q |
317 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17443217 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataattgatttcatgacga |
17443118 |
T |
|
| Q |
417 |
aagtgatgaaagttgt |
432 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
17443117 |
aagttatgaaagttgt |
17443102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 4873326 - 4873741
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873326 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
4873425 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873426 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctct |
4873525 |
T |
|
| Q |
217 |
taccatccttcactctgctgtgaatgatgatgtttttatgagaatctcacacttggagacagcaaaacaagtttgggaaaagctagaagaaaagtttttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4873526 |
taccatccttcactctgctgtgaatgatgatgttttcatgagaatctcacacttagagacagcaaaacaagtttgggaaaagctagaagaagagtttttt |
4873625 |
T |
|
| Q |
317 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873626 |
gggaatgaaagaaccaagcagatgcaggttctaaatctcaaaagagagtttgaagccttaaagatgaatgaggctgaaaacataaatgatttcatgacga |
4873725 |
T |
|
| Q |
417 |
aagtgatgaaagttgt |
432 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
4873726 |
aagttatgaaagttgt |
4873741 |
T |
|
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