View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_27 (Length: 384)
Name: NF7741_high_27
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 36017797 - 36018150
Alignment:
| Q |
19 |
aagattgttcttgtgaaacaactttgctagataagatagcgcatgagctttgccagtcggttcgggttgaaccggtgtcataacttgaaccgtaagcaca |
118 |
Q |
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| T |
36017797 |
aagattgttcttgtgaaacaactttgctagataagatagcgcatgagctttgccagtcggttcgggttgaaccggtgtcataacttgaaccgtaagcaca |
36017896 |
T |
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| Q |
119 |
tttgacagaaacacggttcggaccaagccggtttggaaatttccacggccgtgttattgttatgtggttgaaattgagggtgttagaagagggaggtgga |
218 |
Q |
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| T |
36017897 |
tttgacagaaacacggttcggaccaagccggtttggaaatttccacggccgtgttattgttatgtggttgaaattgagggtgttagaagagggaggtgga |
36017996 |
T |
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| Q |
219 |
gatagagtattcattattgaaatgggggtgttgaaagcaattgaaaatagaaagggaaaaagtgtgtgttattgaaatgaagcttgtgttattctctttt |
318 |
Q |
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| T |
36017997 |
gatagagtattcattattgaaatgggggtgttgaaagcaattaaaaatagaaagggaaaaagtgtgtgttattgaaatgaagcttgtgttattctctttt |
36018096 |
T |
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| Q |
319 |
ggagaaggaaacaagctgagaaagaagtggaggtggttaaggggtttaaatatt |
372 |
Q |
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| T |
36018097 |
ggagaaggaaacaagctgagaaagaagtggaggtggttaaggggtttaaatatt |
36018150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 20137198 - 20137145
Alignment:
| Q |
42 |
ttgctagataagatagcgcatgagctttgccagtcggttcgggttgaaccggtg |
95 |
Q |
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| T |
20137198 |
ttgcttgataaaatagcgcatgagctttgccaatcggctcggtttgaaccggtg |
20137145 |
T |
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