View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_28 (Length: 384)
Name: NF7741_high_28
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 25351343 - 25351696
Alignment:
| Q |
9 |
cgaagaatattgttaatagtaagttttctaaatgaataaagattatacaaatattttgatgcaagagttgatataatacaaagaaaatcaaacatcaact |
108 |
Q |
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| T |
25351343 |
cgaagaaaattgttaatagtaagttttctaaatgaataaagattatacaaatattttgatgcaagagttgatataatacaaagaaaatcaaacatcaact |
25351442 |
T |
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| Q |
109 |
gaaaaagaaatcaacctatataaattggtagaatcagcaagcaccaa-tatgaaatgaatttatctaataaaaaattattttcacttagcaagcaagata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25351443 |
gaaaaagaaatcaacctatataaattggtagaatcagcaagcaccaaatatgaaatgaatttatctaataaaaaattattttcacttagcaagcatgata |
25351542 |
T |
|
| Q |
208 |
tgacaagcaacgcactaaccagaggaaaaaactaaaagctggattatgtcataaataaaaggaaagtctttgatgtacacgtgttaaatgggaaggaaac |
307 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25351543 |
tgacaagcaacgcactacccagtggaaaaaactaaaagctggattatgtcataaataaaaggaaagtctttgatgtacacgtgttaaatgggaaggaaac |
25351642 |
T |
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| Q |
308 |
tctatatatagtagagaaagtgtgatatccaacgatttctcactcctactcctca |
362 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25351643 |
tctatatatagtagag-aagtgtgatatccaacgatttctcactcctactcctca |
25351696 |
T |
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