View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_34 (Length: 340)
Name: NF7741_high_34
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 53426864 - 53427179
Alignment:
| Q |
17 |
agtcataggtgaatatttggacatgcataatttgttttttctttatatcctgatatagattctttaccaaaactaatgagcttatgttcacaaaaatgac |
116 |
Q |
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| T |
53426864 |
agtcataggtgaatatttggacatgcataatttgttttttctttaaatcctgatatagattctttaccaaaactaatgagcttatgttcacaaaaatgac |
53426963 |
T |
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| Q |
117 |
aaatttactatttcattttctcacgagatatgtgcagcatattgtccaagcctaacacagctctctctaaatattccaaaagtgcagccaacagtatgaa |
216 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426964 |
aaatttactatttcattttctaacaagatatgtgcagcatattgtccaagcctaacacagctctctctaaatattccaaaagtgcagccaacagtatgaa |
53427063 |
T |
|
| Q |
217 |
ctatgaagcaaataaaa--ttaacactaaagacataagnnnnnnnggtggggtgatcgcatggaaagatgatgctgcaatggatggatctctttggttta |
314 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53427064 |
ctatgaagcaaataaaagtttaacactaaagacataagaaaaaaaggtggggtgatcgcatggaaagatgatgctgcaatggatggatctctttggttta |
53427163 |
T |
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| Q |
315 |
aaaatttgcatctctg |
330 |
Q |
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|||||||||||||||| |
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| T |
53427164 |
aaaatttgcatctctg |
53427179 |
T |
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