View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_36 (Length: 332)
Name: NF7741_high_36
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 21924847 - 21924636
Alignment:
| Q |
54 |
attgttcgagattatcttcttcttctatgatcaatccaccattattcgaagactcttctattggttcctttttatgatttcgttgctcannnnnnnnnnn |
153 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21924847 |
attgttcgagattatcttcttct---atgaccaatccaccattattcgaagactcttctattggttcctttttatgatttcgttgctcatttttttcttc |
21924751 |
T |
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| Q |
154 |
nnnnnnncactaccaaatgcatgtttttgggcaacattacacgataaaataatgaaacaaaacaaataaaataatagcacttgaatcatgcttgccgatg |
253 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21924750 |
attttttcactaccaaatgcatgttttcgggcaacattacacgataaaataatgaaacaaaacaaataaaataatagcacttgaatcatacttgccgatg |
21924651 |
T |
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| Q |
254 |
aagctgccactagaa |
268 |
Q |
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| T |
21924650 |
aagctgccactagaa |
21924636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 16183475 - 16183375
Alignment:
| Q |
165 |
accaaatgcatgtttttg-ggcaacattacacgataaaataatgaaacaaaacaaataaaataatagcacttgaatcatgcttgccgatgaagctgccac |
263 |
Q |
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| T |
16183475 |
accacatgcatgttttcgcggcaacattatacgataaaataattaaacaaaacaaataaaataatagcatatgaattgtactcgcagatgaagctgccac |
16183376 |
T |
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| Q |
264 |
t |
264 |
Q |
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| T |
16183375 |
t |
16183375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 702960 - 702870
Alignment:
| Q |
17 |
tcattgatgggattgcaatccttctaatttttattacattgttcgagattatcttcttcttctatgatcaatccaccattattcgaagactctt |
110 |
Q |
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| T |
702960 |
tcattgatgagattgtcatcattcgaattttcattagattgttcaagattattttcttct---atggtcaatccatcattattcgaagactctt |
702870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 32670787 - 32670729
Alignment:
| Q |
198 |
taaaataatgaaacaaaacaaataaaataatagcacttgaatcatgcttgccgatgaag |
256 |
Q |
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| T |
32670787 |
taaaataatgaaacaaaactaataacatactaacacttgaatcatgtttgttgatgaag |
32670729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 12543131 - 12543065
Alignment:
| Q |
200 |
aaataatgaaacaaaacaaataaaataatagcacttgaatcatgcttgccgatgaagctgccactag |
266 |
Q |
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| T |
12543131 |
aaataatgaaataaaacgaatagcataatagcccctgaatcatgctcgccgatgaagctgtcactag |
12543065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 42963421 - 42963470
Alignment:
| Q |
184 |
gcaacattacacgataaaataatgaaacaaaacaaataaaataatagcac |
233 |
Q |
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| T |
42963421 |
gcaacattatacgataaaataacgaaacaaagcaaatcaaataatagcac |
42963470 |
T |
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