View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_high_37 (Length: 331)

Name: NF7741_high_37
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_high_37
NF7741_high_37
[»] chr5 (3 HSPs)
chr5 (180-316)||(24894081-24894217)
chr5 (5-82)||(24893906-24893983)
chr5 (180-297)||(24999047-24999164)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 180 - 316
Target Start/End: Original strand, 24894081 - 24894217
Alignment:
Q  180 ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt 279  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24894081 ggagctaaatctctcagtatatcccacttcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagacggactaactcctt 24894180  T
Q  280 taataccactgctgccggaattgagttcggacgaaga 316  Q
    |||||||||||||||||||||||||||||||||||||    
T  24894181 taataccactgctgccggaattgagttcggacgaaga 24894217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 24893906 - 24893983
Alignment:
Q  5 atcccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24893906 atcccatgttgagcatgttgagctagaaatagaattcctcaatagatcccacgatgagcatgtcgagctagtctctcc 24893983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 297
Target Start/End: Original strand, 24999047 - 24999164
Alignment:
Q  180 ggagctaaatccctcagtatatcccacgtcgaacacatgtcatccacagcagaaaccacaacccctggtggcggcttaagcatagatggactaactcctt 279  Q
    ||||| ||||||||||| ||||||||||| |||||| ||||||||||| ||||||||  ||||||||| |||||||||||||| |  || |||| ||| |    
T  24999047 ggagcaaaatccctcagaatatcccacgttgaacacgtgtcatccacaacagaaacccgaacccctggcggcggcttaagcatcggcggtctaattccct 24999146  T
Q  280 taataccactgctgccgg 297  Q
    ||||||||| ||||||||    
T  24999147 taataccaccgctgccgg 24999164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University