View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_41 (Length: 323)
Name: NF7741_high_41
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 3569307 - 3569016
Alignment:
| Q |
16 |
atcctaaataaacaaagggtccgcaataataattaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatatagga |
115 |
Q |
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| T |
3569307 |
atcctaaataaacaaagggtccgcaataataactaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatatagga |
3569208 |
T |
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| Q |
116 |
caatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
3569207 |
caatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttcttgttgtcgtaatttctgttttt |
3569108 |
T |
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| Q |
216 |
gcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaattccatatcacgttgaatatt |
309 |
Q |
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| T |
3569107 |
gcttcttggacaaaaccagcgtgaatagatcttccactgccttttgatcgtactcccgaattctatgccac--ttccatatcacgttgaatatt |
3569016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 91 - 309
Target Start/End: Original strand, 34215439 - 34215649
Alignment:
| Q |
91 |
ttaccttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggact |
190 |
Q |
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| T |
34215439 |
ttaccgtgagcattccaatataggacagtcattgggcacttggagatgaagcac-ccct-------tgagcaggttctatacggcggtttcccaaggaca |
34215530 |
T |
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| Q |
191 |
tgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaatt |
290 |
Q |
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| T |
34215531 |
tgttgttgtctgaatttcagtttttgcttcttggacaaaaccggtgtgaatggatcttccgctgccttttgatcgtactcccgaattcgattccataatt |
34215630 |
T |
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| Q |
291 |
ccatatcacgttgaatatt |
309 |
Q |
| |
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| T |
34215631 |
ccatatcacgttgaatatt |
34215649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 34215364 - 34215396
Alignment:
| Q |
35 |
tccgcaataataattaacactggtttatgagac |
67 |
Q |
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| T |
34215364 |
tccgcaataataattaacaatggtttatgagac |
34215396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 104 - 309
Target Start/End: Complemental strand, 11213285 - 11213091
Alignment:
| Q |
104 |
tccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgta |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||| || |||||| |||||| |||||||| | |
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| T |
11213285 |
tccaatataggacaatcattgggcacttggagatgaa--------tcaccccttgaacgggttctataccgcagtttcccaaggaca---cgttgtcgca |
11213197 |
T |
|
| Q |
204 |
atttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgatcgtactcccgaattctatgccacaattccatatcacgttg |
303 |
Q |
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|||||||||||||||||||||| |||||| |||||| | ||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11213196 |
atttctgtttttgcttcttggataaaaccggtgtgattggatctcccgctgccttttgatcgtactcccgaattctattccacaattccatatcacgttg |
11213097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 298
Target Start/End: Complemental strand, 35222780 - 35222554
Alignment:
| Q |
70 |
aaagcaactcttgtgcccgagtt------accttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgg |
163 |
Q |
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||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||| |||||||||| |||| || ||||||| |
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| T |
35222780 |
aaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgag--------tcaccccttgagcgg |
35222689 |
T |
|
| Q |
164 |
gttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttgat |
263 |
Q |
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|||| ||| ||||| |||| ||| | |||| |||| || ||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| |
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| T |
35222688 |
gttcaatatggcggcttcccaagaatttgttgttgccgcaatttctgtttttgcttcttggacaaaacaagagtaaatggatcttcctttcccttttgat |
35222589 |
T |
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| Q |
264 |
cgtactcccgaattctatgccacaattccatatca |
298 |
Q |
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||||||| |||||||||| ||||||||||||||| |
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| T |
35222588 |
cgtactctcgaattctatttcacaattccatatca |
35222554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 17368122 - 17368047
Alignment:
| Q |
157 |
tgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaacc |
232 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
17368122 |
tgagcgggttttatacggcggtttcccaaggacatgttgttgtcgcaatttctgtttttgcttcttggacaaaacc |
17368047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 23050381 - 23050337
Alignment:
| Q |
37 |
cgcaataataattaacactggtttatgagacggaaagcaactctt |
81 |
Q |
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||||||||||||||||| ||| ||| ||||| ||||||||||||| |
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| T |
23050381 |
cgcaataataattaacaatggcttaagagacagaaagcaactctt |
23050337 |
T |
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