View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_high_49 (Length: 265)

Name: NF7741_high_49
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_high_49
NF7741_high_49
[»] chr4 (8 HSPs)
chr4 (3-250)||(51302964-51303214)
chr4 (9-247)||(5203941-5204181)
chr4 (7-234)||(10470080-10470309)
chr4 (3-166)||(10484002-10484167)
chr4 (13-219)||(38224499-38224707)
chr4 (3-103)||(40789319-40789419)
chr4 (133-219)||(40789046-40789132)
chr4 (69-222)||(38945688-38945843)
[»] chr2 (2 HSPs)
chr2 (3-247)||(35060903-35061149)
chr2 (1-54)||(3276055-3276108)
[»] chr7 (1 HSPs)
chr7 (31-90)||(29339734-29339793)
[»] chr1 (1 HSPs)
chr1 (13-222)||(1928848-1929059)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 51302964 - 51303214
Alignment:
Q  3 tttgtcatatagtctgcacattgattctcctctct-aagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataaca 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  51302964 tttgtcatatagtctgcacattgattctcctctcttaagagtgtgagaaaccgttacattgagttgatgaagcatttgttttatgtcttgtatgataaca 51303063  T
Q  102 acataaatatggaacctcttaatgggatcatata--aggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgcca 199  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  51303064 acataaatatggaacctcttaatggggtcatatacaaggttgatgcaagcaagataatcagaatatcaaacaaggtcgacatatcccaaatcctttgcca 51303163  T
Q  200 tgatcaactcgtgatagatagcaaaaatctcacctggcaagatgtcatatg 250  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  51303164 tgatcaacccgtgatagataacaaaaatctcacctagcaagatgtcatatg 51303214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 5203941 - 5204181
Alignment:
Q  9 atatagtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaacataaa 108  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||| |    
T  5203941 atatagtttgcacattgattcccctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcataga 5204040  T
Q  109 tatggaacctcttaatgggatc--atataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccatgatcaa 206  Q
    |||||||||||| ||||||  |  ||||||||||||||||||||||| |||||||||||| |  ||| || ||||||||||||||||||||||||||||     
T  5204041 tatggaacctctcaatggggccatatataaggttgatgcaagcaagagaatcagaatagcaagaaagttctgcatatcccaaatcctttgccatgatcag 5204140  T
Q  207 ctcgtgatagatagcaaaaatctcacctggcaagatgtcat 247  Q
    | |||||||||||||| |||  |||||| ||||||||||||    
T  5204141 cccgtgatagatagcagaaagatcacctagcaagatgtcat 5204181  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 10470080 - 10470309
Alignment:
Q  7 tcatatagtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaacata 106  Q
    |||| ||||||||||| || ||| |||||||||||||||| ||||| |||  |||| |||| ||||||||||||||||| ||||  |||| ||| |||||    
T  10470080 tcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacata 10470179  T
Q  107 aatatggaacctcttaatgggatcat--ataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccatgatc 204  Q
     |||||| | |||   |||||| |||  |||||||||| |||||||||| |||||||||||| | |||| |  ||||| | |||||| || |||||||||    
T  10470180 gatatggtatctcacgatgggaccattaataaggttgacgcaagcaagagaatcagaatagcaagcaagttttgcataactcaaatctttagccatgatc 10470279  T
Q  205 aactcgtgatagatagcaaaaatctcacct 234  Q
    | | ||||| || ||||| ||| |||||||    
T  10470280 agcccgtgacaggtagcagaaagctcacct 10470309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 10484002 - 10484167
Alignment:
Q  3 tttgtcatatagtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaa 102  Q
    |||| ||| |||||||| || || ||| | |||||||||||||| |||| |||| |||||||||| ||||||||| ||||||| ||||  |||| |||||    
T  10484002 tttgccatgtagtctgcccaatggttcccttctctaagagtgtgagaaattgttgcattgatttgttgaagcattggttttatctcttggatgagaacaa 10484101  T
Q  103 cataaatatggaacctcttaatgggatcat--ataaggttgatgcaagcaagataatcagaatagc 166  Q
    || | |||||| | |||| ||||||| |||  ||||||||||| ||||||||| ||||||||||||    
T  10484102 cagagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagc 10484167  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 38224707 - 38224499
Alignment:
Q  13 agtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaacataaatatg 112  Q
    |||||||||| ||||| | ||||||||||||||| ||||| |||||  || | || ||||||| ||| ||||||||||  |||| ||||||||| || ||    
T  38224707 agtctgcacactgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtctttgatgagaacaacatagatgtg 38224608  T
Q  113 gaacctcttaatgggatca--tataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccatgatcaactcg 210  Q
      | | || ||||||  ||  |||||| || | |||| ||||||||||||| |||| |||||| |  | ||| |||||||||||  |||||||||  | |    
T  38224607 ataacactcaatggggccatttataagattaacgcaaacaagataatcagagtagcaaacaagctttgtataacccaaatccttctccatgatcagattg 38224508  T
Q  211 tgatagata 219  Q
    |||||||||    
T  38224507 tgatagata 38224499  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 40789419 - 40789319
Alignment:
Q  3 tttgtcatatagtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaa 102  Q
    |||| ||| ||||||||||| || ||| |||||||||||||| | ||||| |||| |||| |||| ||||| | |||||| |||||| |||||| |||||    
T  40789419 tttgccatgtagtctgcacaatggttcccctctctaagagtgcgagaaaccgttagattggtttgttgaagaaattgtttcatgtctcatatgagaacaa 40789320  T
Q  103 c 103  Q
    |    
T  40789319 c 40789319  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 40789132 - 40789046
Alignment:
Q  133 ataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccatgatcaactcgtgatagata 219  Q
    |||| |||||||||||||||| |||||||||||| |||||  || | |||  ||||||| |||| |||||||| ||| |||||||||    
T  40789132 ataaagttgatgcaagcaagagaatcagaatagcaaacaaattctggataaaccaaatcttttgtcatgatcagctcatgatagata 40789046  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 38945843 - 38945688
Alignment:
Q  69 tgaagcatttgttttatgtcttatatgataacaacataaatatggaacctcttaatgggatcat--ataaggttgatgcaagcaagataatcagaatagc 166  Q
    ||||||| ||| ||||||||||  |||| ||||||||| |||||| || ||| ||| || ||||  ||||| || |||||| ||||| |||| || ||||    
T  38945843 tgaagcaattgctttatgtcttggatgaaaacaacatagatatggtacgtctcaatcgggtcatttataagattaatgcaaacaagagaatccgagtagc 38945744  T
Q  167 gaacaaggtcggcatatcccaaatcctttgccatgatcaactcgtgatagatagca 222  Q
     |||||| |  | ||| ||||||||||| ||||||||||   ||||||| ||||||    
T  38945743 aaacaagctatgtataacccaaatccttcgccatgatcagaccgtgataaatagca 38945688  T

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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 35060903 - 35061149
Alignment:
Q  3 tttgtcatatagtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaa 102  Q
    |||| ||| |||| |||||| || |||  ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||  |||| |||||    
T  35060903 tttgccatgtagtttgcacaatggttcctctctctaagagtgtgagaaactgttacattggtttgttgaagcatttgttttatgtcttggatgagaacaa 35061002  T
Q  103 cataaatatggaacctcttaatgggatcat--ataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccat 200  Q
      || |||||| |||| | ||||||| |||  ||||||||||||||||||||| |||||||||||| | |||| |  ||||| |||||||| ||||||||    
T  35061003 tgtagatatggtacctttcaatgggaccattaataaggttgatgcaagcaagagaatcagaatagcaagcaagttatgcataacccaaatcttttgccat 35061102  T
Q  201 gatcaactcgtgatagatagcaaaaatctcacctggcaagatgtcat 247  Q
    ||| | | | ||||| |||||| ||| ||||||| ||| ||| ||||    
T  35061103 gattagcccatgatatatagcagaaagctcacctagcaggatatcat 35061149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3276108 - 3276055
Alignment:
Q  1 gttttgtcatatagtctgcacattgattctcctctctaagagtgtgggaaactg 54  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||| |||||||    
T  3276108 gttttgccatataatctgcacattgattctcctctctaaaagtgtgagaaactg 3276055  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 29339793 - 29339734
Alignment:
Q  31 cctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtctt 90  Q
    |||||||||||| ||| ||||| || ||||||||||| || |||| ||||||||||||||    
T  29339793 cctctctaagagcgtgagaaaccgtcacattgatttggtggagcaattgttttatgtctt 29339734  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 1928848 - 1929059
Alignment:
Q  13 agtctgcacattgattctcctctctaagagtgtgggaaactgttacattgatttgatgaagcatttgttttatgtcttatatgataacaacataaatatg 112  Q
    |||||||||| |||||   ||||||||||||||| ||||  ||||| ||| | || |||| || ||  ||||||| ||  |||| ||||||||| ||  |    
T  1928848 agtctgcacactgatttctctctctaagagtgtgagaaatcgttacgttgttatggtgaaacaattactttatgttttggatgagaacaacatagatgag 1928947  T
Q  113 gaacctcttaatgggatcat--ataaggttgatgcaagcaagataatcagaatagcgaacaaggtcggcatatcccaaatcctttgccatgatcaactcg 210  Q
    | |||||| ||| || ||||  ||||| || |||||| ||||| ||||||| |||| |||||| || | ||| | |||||||||  |||||||||   |     
T  1928948 gtacctctcaatagggtcatttataagattaatgcaaacaagagaatcagagtagcaaacaagctctgtataactcaaatccttctccatgatcagacca 1929047  T
Q  211 tgatagatagca 222  Q
    ||||||||||||    
T  1929048 tgatagatagca 1929059  T

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