View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_high_50 (Length: 247)

Name: NF7741_high_50

Description: NF7741

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7741_high_50

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 149; E-Value: 8e-79

Query Start/End: Original strand, 17 - 165

Target Start/End: Complemental strand, 41637902 - 41637754

Alignment:

Q	17	atattaaataaactccaattctatacacatagtaatcagccaacgaataaacaagatacaatttgatatttttgtcaaatcaaacaagcttaacccacca	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41637902	atattaaataaactccaattctatacacatagtaatcagccaacgaataaacaagatacaatttgatatttttgtcaaatcaaacaagcttaacccacca	41637803	T

Q	117	gtgatgtagtcgccttcatgcggacggaagacatatacactctacatgt	165	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41637802	gtgatgtagtcgccttcatgcggacggaagacatatacactctacatgt	41637754	T

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Target: chr2; HSP #2

Raw Score: 68; E-Value: 2e-30

Query Start/End: Original strand, 163 - 230

Target Start/End: Complemental strand, 41637593 - 41637526

Alignment:

Q	163	tgtggtgatgttatgtgttgttagaccattgttttactttgtagcggccaccatggccacaaaagtag	230	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41637593	tgtggtgatgttatgtgttgttagaccattgttttactttgtagcggccaccatggccacaaaagtag	41637526	T

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