View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_55 (Length: 238)
Name: NF7741_high_55
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2880950 - 2881171
Alignment:
| Q |
1 |
gagcataaaaatagtgaaatcataaaaataatatcaacaagtgggtattgcatatgatcatattattttttgatacctcaaaaagaagatcaataacacg |
100 |
Q |
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| T |
2880950 |
gagcataaaaatagtgaaatcataaaaataatatcaacaagtgggtattgcatatgatcatattattttttgatacctcaaaaagaagatcaataacacg |
2881049 |
T |
|
| Q |
101 |
cttcatttgagcaccaacaggagctttacgaatactattaatatgttgaagtctctccgtatcggtcgaaaatttgaccggagcaagagcatttggcaca |
200 |
Q |
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| T |
2881050 |
cttcatttgagcaccaacaggagctttacgaatactattaatatgttgaagtctctccgtatcggtcgaaaatttgaccggagcaagagcatttggcaca |
2881149 |
T |
|
| Q |
201 |
gatgcagatacagccttgtttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2881150 |
gatgcagatacagccttgtttg |
2881171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 40704777 - 40704701
Alignment:
| Q |
87 |
agatcaataacacgcttcatttgagcaccaacaggagctttacgaatactattaatatgttgaagtctctccgtatc |
163 |
Q |
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| T |
40704777 |
agatcaataacacgcttcatctgagcaccaacgggggctttacgtatattattaatctgctgaagcctctcagtatc |
40704701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 50806977 - 50807019
Alignment:
| Q |
87 |
agatcaataacacgcttcatttgagcaccaacaggagctttac |
129 |
Q |
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| T |
50806977 |
agatcaataacacgcttcatctgagcaccaacgggggctttac |
50807019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 50868900 - 50868858
Alignment:
| Q |
87 |
agatcaataacacgcttcatttgagcaccaacaggagctttac |
129 |
Q |
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| T |
50868900 |
agatcaataacacgcttcatctgagcaccaacgggggctttac |
50868858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 19056458 - 19056418
Alignment:
| Q |
87 |
agatcaataacacgcttcatttgagcaccaacaggagcttt |
127 |
Q |
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| T |
19056458 |
agatcaataacacgcttcatctgagcaccaacgggggcttt |
19056418 |
T |
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