View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_high_56 (Length: 228)
Name: NF7741_high_56
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4652313 - 4652238
Alignment:
| Q |
1 |
gttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4652313 |
gttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatctctctc |
4652238 |
T |
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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 4652144 - 4652085
Alignment:
| Q |
170 |
ccagacttttgttactctcatgaagaagcctcc-aaagccaatcattactgatcaagatc |
228 |
Q |
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| T |
4652144 |
ccagacttttgttactctcatgaagaagcctccaaaagccaatcattactgatcaagatc |
4652085 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23302355 - 23302430
Alignment:
| Q |
1 |
gttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
76 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
23302355 |
gttgtgcgctcattcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
23302430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 23302525 - 23302583
Alignment:
| Q |
170 |
ccagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatc |
228 |
Q |
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| T |
23302525 |
ccagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatc |
23302583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16149704 - 16149629
Alignment:
| Q |
1 |
gttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
76 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
16149704 |
gttgtgcgctcattcgaaatgaaacggtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
16149629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 16149535 - 16149478
Alignment:
| Q |
171 |
cagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16149535 |
cagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatc |
16149478 |
T |
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