View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_high_58 (Length: 225)

Name: NF7741_high_58
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_high_58
NF7741_high_58
[»] chr6 (6 HSPs)
chr6 (20-210)||(22816259-22816451)
chr6 (20-96)||(7358515-7358591)
chr6 (18-98)||(31492927-31493007)
chr6 (18-98)||(31498316-31498396)
chr6 (126-210)||(22789982-22790068)
chr6 (16-81)||(14304410-14304475)
[»] chr1 (6 HSPs)
chr1 (16-98)||(40100532-40100614)
chr1 (18-98)||(15170219-15170299)
chr1 (16-98)||(23825154-23825236)
chr1 (16-98)||(23827377-23827459)
chr1 (16-98)||(35379666-35379748)
chr1 (16-96)||(16436105-16436185)
[»] chr2 (7 HSPs)
chr2 (18-98)||(12192453-12192533)
chr2 (18-98)||(13196409-13196489)
chr2 (16-98)||(27183102-27183184)
chr2 (16-98)||(27832644-27832726)
chr2 (16-98)||(41186829-41186911)
chr2 (22-98)||(22061026-22061102)
chr2 (18-98)||(40171938-40172018)
[»] chr8 (7 HSPs)
chr8 (18-98)||(16872514-16872594)
chr8 (18-81)||(9792222-9792285)
chr8 (16-98)||(24422462-24422544)
chr8 (16-98)||(26513735-26513817)
chr8 (16-98)||(39168942-39169024)
chr8 (32-96)||(4393937-4394001)
chr8 (18-98)||(18673415-18673495)
[»] chr7 (8 HSPs)
chr7 (18-98)||(6696775-6696855)
chr7 (16-98)||(584528-584610)
chr7 (16-98)||(2849923-2850005)
chr7 (16-82)||(23726528-23726594)
chr7 (16-98)||(36669680-36669762)
chr7 (18-98)||(28234295-28234375)
chr7 (18-98)||(36916713-36916793)
chr7 (20-96)||(42121950-42122026)
[»] chr5 (3 HSPs)
chr5 (18-98)||(4456440-4456520)
chr5 (21-98)||(6334998-6335075)
chr5 (18-98)||(32292500-32292580)
[»] scaffold0444 (1 HSPs)
scaffold0444 (16-98)||(7642-7724)
[»] chr4 (3 HSPs)
chr4 (16-98)||(36937245-36937327)
chr4 (16-98)||(56235196-56235278)
chr4 (66-98)||(50174408-50174440)
[»] chr3 (7 HSPs)
chr3 (16-98)||(47498057-47498139)
chr3 (16-98)||(52262271-52262353)
chr3 (29-98)||(22926083-22926152)
chr3 (16-97)||(29517366-29517447)
chr3 (16-81)||(38096093-38096158)
chr3 (16-96)||(9508657-9508737)
chr3 (16-96)||(9516632-9516712)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 22816259 - 22816451
Alignment:
Q  20 agtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttgggnnnnnnnta--ttattttgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||          |  ||||||||||    
T  22816259 agtaataactaattaagaatataattaaaaatgtaatactaatgtctcattggtattgtaaagcgaattataatttgaaaaaaaaaaaaattattttgaa 22816358  T
Q  118 tcatttgaatttctttgtttatcataatgttgttacttttatgttttctctcacacatcgatatatatcctacccttcaacttatttgatagt 210  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22816359 tcatttaaatttctttgtttatcataatattgttacttttatgttttctctcacacatcgatatatatcctacccttcaacttatttgatagt 22816451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 7358591 - 7358515
Alignment:
Q  20 agtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    |||||||| |||||||||||||||| ||||| |||| | |||| | | |||| |||||||||||||  |||||||||    
T  7358591 agtaataaataattaagaatataataaaaaaagtaacattaatgtttgattgatattgtaaagtgacatataatttg 7358515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31493007 - 31492927
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||||||  || ||||||||    
T  31493007 agagtaataaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagtgacatacaatttggg 31492927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31498396 - 31498316
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||||||  || ||||||||    
T  31498396 agagtaataaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagtgacatacaatttggg 31498316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 22789982 - 22790068
Alignment:
Q  126 atttctttgtttatcataatgttgttacttttatgttttctctcacacatcgatatatatc-ct-acccttcaacttatttgatagt 210  Q
    |||| ||| |||||||||||||||||| | ||||| ||||| ||||| ||| || ||| || || ||||||||||||||||||||||    
T  22789982 atttttttttttatcataatgttgttattcttatgatttctttcacaaatccatttatttctctgacccttcaacttatttgatagt 22790068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 14304475 - 14304410
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaa 81  Q
    |||||||||||| |||||||| |||||||  |||| |||| | |||| | ||||||||||||||||    
T  14304475 agagagtaataaataattaaggatataatagaaaaagtaacattaatttttcattggtattgtaaa 14304410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 40100614 - 40100532
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||  |||| |||| | |||||| ||||||||||||||||||||  |||||||||||    
T  40100614 agagagtaataaatacttaaggatataatagaaaaagtaacattaatatttcattggtattgtaaagtgacatataatttggg 40100532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 15170219 - 15170299
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||| | || ||||| |||||||  |||| |||| | |||||| ||||||||||||||||| ||| |||||||||||    
T  15170219 agagtaattaatagttaaggatataatagaaaaagtaacattaatatttcattggtattgtaaagcgaaatataatttggg 15170299  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 23825154 - 23825236
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | || ||||| ||||||| | ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  23825154 agagagtaattaatagttaaggatataataagaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 23825236  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 23827459 - 23827377
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||   ||| |||| | |||||| ||||||||||||||||||||  || ||||||||    
T  23827459 agagagtaataaatagttaaggatataataggaaaagtaacattaatatttcattggtattgtaaagtgacatacaatttggg 23827377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 35379666 - 35379748
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  35379666 agagagtaattaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 35379748  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 16436185 - 16436105
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    |||||||||||| || ||||  ||||||| | ||| |||||| |||||| | ||||||||||||||| ||  |||||||||    
T  16436185 agagagtaataaatagttaaagatataataagaaaagtaatattaatattttattggtattgtaaagcgacatataatttg 16436105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 12192533 - 12192453
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||||||  |||||||||||    
T  12192533 agagtaataaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagtgacatataatttggg 12192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 13196489 - 13196409
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||  ||||  ||||| |||| | |||||||||||||||| |||  |||||||||||    
T  13196489 agagtaataaataattaagcatataatagaaaaaataatattaatgtttcattggtattgtaaaatgatatataatttggg 13196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 27183184 - 27183102
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||   ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  27183184 agagagtaataaatagttaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 27183102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 27832726 - 27832644
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||   ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  27832726 agagagtaataaatagttaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 27832644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 41186911 - 41186829
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| |||||||| |||||||   ||| |||| | |||| | ||||||||||||||||| ||  |||||||||||    
T  41186911 agagagtaataaataattaaggatataataggaaaagtaacattaatttttcattggtattgtaaagcgacgtataatttggg 41186829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 22061102 - 22061026
Alignment:
Q  22 taataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||| |||||||| |||||||   ||| |||| | |||| | ||||||||||||||||||||  |||||||||||    
T  22061102 taataaataattaaggatataataggaaaagtaacattaatgtttcattggtattgtaaagtgacatataatttggg 22061026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 40172018 - 40171938
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||  |||||||  |||| |||| | |||| | ||||||||||||||||||||  || ||||||||    
T  40172018 agagtaataaataattaaagatataatagaaaaagtaacattaatgtgtcattggtattgtaaagtgacatacaatttggg 40171938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 16872514 - 16872594
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||||||  || ||||||||    
T  16872514 agagtaataaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagtgacatacaatttggg 16872594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9792222 - 9792285
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaa 81  Q
    |||||||||| || ||||| |||||||  |||| |||||| |||||| ||||||||||||||||    
T  9792222 agagtaataaatatttaaggatataatagaaaaagtaatattaatatttcattggtattgtaaa 9792285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 24422462 - 24422544
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||   ||| |||||| |||| | ||||||||||||||||| ||  |||||||||||    
T  24422462 agagagtaataaatagttaaggatataataggaaaagtaatattaatttttcattggtattgtaaagcgacatataatttggg 24422544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26513817 - 26513735
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | || ||||| |||||||  |||| |||| |  ||||| ||||||||||||||||||||  |||||||||||    
T  26513817 agagagtaattaatagttaaggatataatagaaaaagtaacataaatatttcattggtattgtaaagtgacatataatttggg 26513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 39168942 - 39169024
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || |||||||||||||   ||| |||| | |||| | ||||||||||||||||||||  || ||||||||    
T  39168942 agagagtaataaatagttaagaatataataggaaaagtaacattaatttttcattggtattgtaaagtgacatacaatttggg 39169024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 4394001 - 4393937
Alignment:
Q  32 ttaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    ||||| ||||||| | ||| |||||| |||||| ||||||||||||||||| ||  |||||||||    
T  4394001 ttaaggatataataagaaaagtaatattaatatttcattggtattgtaaagcgacatataatttg 4393937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 18673495 - 18673415
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| || ||||| |||||||  |||| |||| | |||| | ||||||||||| ||||||||  |||||||||||    
T  18673495 agagtaataaatagttaaggatataatagaaaaagtaacattaatgtttcattggtattctaaagtgacatataatttggg 18673415  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 6696775 - 6696855
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| ||||||| |||||  ||| | |||| | ||||||||||||||||  ||| |||||||||||    
T  6696775 agagtaataaataattaaggatataataaaaaaaataacattaatgtttcattggtattgtaaaacgaaatataatttggg 6696855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 584528 - 584610
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| ||||||||  ||||||  |||| |||||| |||| |  |||| ||||||||||||||  |||||||||||    
T  584528 agagagtaataaataattaaggttataatagaaaaagtaatattaatgttgcattagtattgtaaagtgacatataatttggg 584610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 2849923 - 2850005
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| ||||||||| ||||||  |||| |||| | |||| |  |||||||||||||||| ||  |||||||||||    
T  2849923 agagagtaataaataattaagattataatagaaaaagtaacattaatgttgcattggtattgtaaagcgacatataatttggg 2850005  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 23726528 - 23726594
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaag 82  Q
    |||||||||||| || ||||| |||||||  |||| |||||| |||| | |||||||||||||||||    
T  23726528 agagagtaataaatagttaaggatataatagaaaaagtaatattaatttttcattggtattgtaaag 23726594  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 36669680 - 36669762
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | || ||||| |||||||  |||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  36669680 agagagtaattaatagttaaggatataatagaaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 36669762  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 28234295 - 28234375
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| ||||||||||||||||   |||  ||| | |||| | ||||||||||| ||||||||  |||||||||||    
T  28234295 agagtaataaataattaagaatataataggaaaaataacattaatgtttcattggtattctaaagtgacatataatttggg 28234375  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 36916793 - 36916713
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| || |||||||||||||   ||| |||| | |||| | |||||| |||||||||| || ||||||||||||    
T  36916793 agagtaataaatagttaagaatataatatgaaaagtaacattaatttttcattgatattgtaaagcgatttataatttggg 36916713  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 42122026 - 42121950
Alignment:
Q  20 agtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    |||||||| || ||||| |||||||   ||| |||||| |||| | ||||||||||||||||||||  |||||||||    
T  42122026 agtaataaatagttaaggatataataggaaaagtaatattaatgtttcattggtattgtaaagtgacatataatttg 42121950  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 4456520 - 4456440
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| |||||||| |||||||   ||| |||| | |||| | ||||||||||||||||||||  |||||||||||    
T  4456520 agagtaataaataattaaggatataataggaaaagtaacattaatgtttcattggtattgtaaagtgacatataatttggg 4456440  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 6335075 - 6334998
Alignment:
Q  21 gtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    ||||||| |||||||| |||||||   ||| |||||| |||| | |||||||||||||||||| |  |||||||||||    
T  6335075 gtaataaataattaaggatataataggaaaagtaatattaatgtttcattggtattgtaaagtaacatataatttggg 6334998  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 32292580 - 32292500
Alignment:
Q  18 agagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||| | || |||||||||||||   ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  32292580 agagtaattaatagttaagaatataatatgaaaagtaacattaatatttcattggtattgtaaagcgacatataatttggg 32292500  T

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Target: scaffold0444 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 7724 - 7642
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | || ||||| |||||||   ||| |||| | |||||| ||||||||||||||||| || ||||||||||||    
T  7724 agagagtaattaatagttaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacttataatttggg 7642  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 36937327 - 36937245
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || ||||| |||||||  |||| |||||| |||| | | ||||||||||||||| ||  |||||||||||    
T  36937327 agagagtaataaatagttaaggatataatagaaaaagtaatattaattttttattggtattgtaaagagacatataatttggg 36937245  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 56235278 - 56235196
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | || ||||| |||||||   ||| |||| | |||||| ||||||||||||||||| || ||||||||||||    
T  56235278 agagagtaattaatagttaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacttataatttggg 56235196  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 50174440 - 50174408
Alignment:
Q  66 tcattggtattgtaaagtgaattataatttggg 98  Q
    ||||||||||||||||| |||||||||||||||    
T  50174440 tcattggtattgtaaagcgaattataatttggg 50174408  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 47498057 - 47498139
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||| | |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||| ||  |||||||||||    
T  47498057 agagagtaattaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgatatataatttggg 47498139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 52262353 - 52262271
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||||||| || |||||  ||||||  |||| |||| | |||| | ||||||||||||||||||||  |||||||||||    
T  52262353 agagagtaataaatagttaagggtataatagaaaaagtaacattaatgtttcattggtattgtaaagtgacgtataatttggg 52262271  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 22926152 - 22926083
Alignment:
Q  29 taattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttggg 98  Q
    |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||| || ||||||||||||    
T  22926152 taattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacttataatttggg 22926083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 29517366 - 29517447
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttgg 97  Q
    |||||||||| | |||||||| |||||||   ||| |||| | |||||| ||||||||||||||||| ||  ||||||||||    
T  29517366 agagagtaattaataattaaggatataataggaaaagtaacattaatatttcattggtattgtaaagcgacatataatttgg 29517447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 38096158 - 38096093
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaa 81  Q
    |||||||||||| || ||||| |||||||  ||||||||| | |||| | ||||||||||||||||    
T  38096158 agagagtaataaatagttaaggatataatagaaaatgtaacattaatttttcattggtattgtaaa 38096093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 9508657 - 9508737
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    |||||||||||| || |||||||||||||  |||| |||| | ||||||  ||||| |||||||||| ||  |||||||||    
T  9508657 agagagtaataaatagttaagaatataatagaaaaagtaacattaatattacattgatattgtaaagcgacatataatttg 9508737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 9516632 - 9516712
Alignment:
Q  16 agagagtaataactaattaagaatataattaaaaatgtaatactaatatctcattggtattgtaaagtgaattataatttg 96  Q
    |||||||||||| || |||||||||||||  |||| |||| | ||||||  ||||| |||||||||| ||  |||||||||    
T  9516632 agagagtaataaatagttaagaatataatagaaaaagtaacattaatattacattgatattgtaaagcgacatataatttg 9516712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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