View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_11 (Length: 542)

Name: NF7741_low_11
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_11
NF7741_low_11
[»] chr5 (8 HSPs)
chr5 (254-527)||(29021345-29021618)
chr5 (278-535)||(28673501-28673751)
chr5 (351-522)||(28695763-28695933)
chr5 (89-185)||(29021250-29021346)
chr5 (89-243)||(28695980-28696130)
chr5 (89-243)||(28673765-28673915)
chr5 (467-522)||(28532571-28532626)
chr5 (282-339)||(28532392-28532449)
[»] chr4 (2 HSPs)
chr4 (282-337)||(3438016-3438071)
chr4 (473-522)||(532587-532636)
[»] chr7 (1 HSPs)
chr7 (283-340)||(10615269-10615326)
[»] chr8 (2 HSPs)
chr8 (470-522)||(18314877-18314929)
chr8 (470-526)||(32151732-32151788)
[»] chr6 (1 HSPs)
chr6 (282-338)||(6588694-6588750)
[»] chr3 (1 HSPs)
chr3 (467-511)||(13469924-13469968)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 254 - 527
Target Start/End: Original strand, 29021345 - 29021618
Alignment:
Q  254 aaggaaaaaacaagcaggcatacatataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021345 aaggaaaaaacaagcaggcatacatataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaa 29021444  T
Q  354 ttgcatagtcgtctggatcggaggtaatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctaggaca 453  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29021445 ttgcatagtcgtctggttcggaggtaatggaatatgataccgtcactattggtctcttgcggtaagcagaagcaatgcaggcaatggttattctaggaca 29021544  T
Q  454 agaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagc 527  Q
    | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29021545 aaaaatgacaataacttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgatatagc 29021618  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 278 - 535
Target Start/End: Complemental strand, 28673751 - 28673501
Alignment:
Q  278 tataacaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagtaacttacattgcaattgcatagtcgtctggatcggagg 377  Q
    ||||||||||||||||||||||||||||| ||||||||||||   |||||||||||| |||||||||||||||||      ||||| ||||| ||||| |    
T  28673751 tataacaaatcaagacaagttaaaccctttaaactcaccaacggatcaatgaaatgttaagtaacttacattgca------tagtcctctggttcggaag 28673658  T
Q  378 taatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacagtaacttcttcgag 477  Q
    ||||||||  ||||||||||| |||||||||||||||| ||||||||||||||||||  ||| ||| |||| ||||||||| |||  |||| ||||||||    
T  28673657 taatggaaattgataccgtcaatgttggtctcttgcggcaagcagaagcaatgcaggagatggttaatctatgacaagaaaagactataacctcttcgag 28673558  T
Q  478 aagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagctgatgatg 535  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  28673557 aagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtag-tgatgatg 28673501  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 351 - 522
Target Start/End: Complemental strand, 28695933 - 28695763
Alignment:
Q  351 caattgcatagtcgtctggatcggaggtaatggaatatgataccgtcactgttggtctcttgcggtaagcagaagcaatgcaggcaatgcttattctagg 450  Q
    |||||||||||| |||||  ||||| |||||||||  ||| ||||||| |||||||||||||||| ||||||||||||||||||  ||| ||| |||| |    
T  28695933 caattgcatagttgtctgt-tcggaagtaatggaaattgacaccgtcaatgttggtctcttgcggcaagcagaagcaatgcaggagatggttaatctatg 28695835  T
Q  451 acaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 522  Q
    |||||||| |||  |||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||    
T  28695834 acaagaaaagactataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgat 28695763  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 29021250 - 29021346
Alignment:
Q  89 taatgtgcgttcagtactattaaggttgcaaatagatttaatcatttgattcatcttgttctcgacgagaggcaaaattaattaaacagtacgttaa 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||| |||||    
T  29021250 taatgtgcgttcaatactattaaggttgcaaatagatttaatcatttggttcatcttgttcttgaccaaaggcaaaattaattaaacagtaagttaa 29021346  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 28696130 - 28695980
Alignment:
Q  89 taatgtgcgttcagtact-attaaggttgcaaatagatttaatcatttgattcatcttgttctcgacgagaggcaaaattaattaaacagtacgttaaag 187  Q
    |||||||| |||| |||| |||||||||||||||||||||||| |||| |||||||||||| | ||| | ||| ||||||||||||||| ||  |||       
T  28696130 taatgtgcattcaatactgattaaggttgcaaatagatttaatgatttcattcatcttgtt-ttgaccaaagg-aaaattaattaaacactaattta--- 28696036  T
Q  188 aagaagaaaagaaacaacagttagtccatagcttcaagaaataaaataactacaaa 243  Q
    | ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  28696035 atgaagaaaggaaacaacagttagtccatagcttcaagaaataaaacaaccacaaa 28695980  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 28673915 - 28673765
Alignment:
Q  89 taatgtgcgttcagtact-attaaggttgcaaatagatttaatcatttgattcatcttgttctcgacgagaggcaaaattaattaaacagtacgttaaag 187  Q
    |||||||| |||| |||| |||||||||||||||||||||||| |||| |||||||||||| | ||| | ||| ||||||||||||||| ||  |||       
T  28673915 taatgtgcattcaatactgattaaggttgcaaatagatttaatgatttcattcatcttgtt-ttgaccaaagg-aaaattaattaaacactaattta--- 28673821  T
Q  188 aagaagaaaagaaacaacagttagtccatagcttcaagaaataaaataactacaaa 243  Q
    | ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||    
T  28673820 atgaagaaaggaaacaactgttagtccatagcttcaagaaataaaacaaccacaaa 28673765  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 28532571 - 28532626
Alignment:
Q  467 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 522  Q
    ||||||| |||||||||||||||| | | |||||||||||||||||||| ||||||    
T  28532571 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 28532626  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 28532392 - 28532449
Alignment:
Q  282 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagt 339  Q
    ||||| |||||||||| ||||||||||||||||||||  ||||||| | |||||||||    
T  28532392 acaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtgaagt 28532449  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 3438071 - 3438016
Alignment:
Q  282 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaa 337  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||    
T  3438071 acaaatcaagacaagttaatcccttcagactcaccaacaagtcaatgaagtgtgaa 3438016  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 532587 - 532636
Alignment:
Q  473 tcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 522  Q
    |||||||||||||| || || | |||||||||||| ||||||||||||||    
T  532587 tcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgat 532636  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 10615269 - 10615326
Alignment:
Q  283 caaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaagta 340  Q
    ||||||||||||||| || ||||| |||||||||||  ||||||| ||||||||||||    
T  10615269 caaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaatgtgaagta 10615326  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 18314929 - 18314877
Alignment:
Q  470 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 522  Q
    |||||||||||||||||||| || | |||||||||||| ||||| ||||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgat 18314877  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 32151732 - 32151788
Alignment:
Q  470 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatag 526  Q
    |||||||||||||| |||||||| | |||||||||||| ||||| || || ||||||    
T  32151732 tcttcgagaagcttccagttgttgaacaagtggaaaagcgattgatctttaatatag 32151788  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 6588750 - 6588694
Alignment:
Q  282 acaaatcaagacaagttaaacccttgaaactcaccaacaagtcaatgaaatgtgaag 338  Q
    ||||| |||||||||| |||| ||| |||||||||||  ||||||| ||||||||||    
T  6588750 acaaaccaagacaagtcaaactcttcaaactcaccaatgagtcaattaaatgtgaag 6588694  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 511
Target Start/End: Complemental strand, 13469968 - 13469924
Alignment:
Q  467 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgat 511  Q
    |||||||||||||||||||||||||  |  |||||||||||||||    
T  13469968 acttcttcgagaagcttacagttgtggaataagtggaaaagtgat 13469924  T

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