View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_13 (Length: 515)
Name: NF7741_low_13
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Original strand, 26776440 - 26776924
Alignment:
| Q |
14 |
ggtgttggctggagaccttggagtgtgctctatcaaggtcttagagactcgattatctcgggtgctagtttagggtttagggtttgagtttcttgaatta |
113 |
Q |
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| T |
26776440 |
ggtgttggctggagaccttggagtgtgctctatcaaggtcttagagactcgattatctcgattgctagtttagggtttagggtttgagtttcttgaatta |
26776539 |
T |
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| Q |
114 |
gttttgatggactccttnnnnnnnnnnggtgtgaaggtttggtgcaactta----catgtcataattgaaaaagtgctaattgtaatccatgtataagga |
209 |
Q |
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| T |
26776540 |
gttttgatggactccttaaaaaaaa--ggtgtgaagttttggtgcaacttaattacatgtcataattgaaaaagtgctaattgtaatccatgtataagga |
26776637 |
T |
|
| Q |
210 |
gttatacatcaaataacttaattatttctagagctttatcgtccaccagctaggattagtgtttgaccgtatcaatatgtgtgtattttacatgcatgtt |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26776638 |
gttatacatcaaataatttaattatttctagagctttatcgtccactagctaggattagtgttcgaccgtatcaatatgtgtgtattttacatgcatgtt |
26776737 |
T |
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| Q |
310 |
tccatattctaagcattgttttaactaattagtattgttttttaagtattttgaaatttgatgagcaggttatttcttatgggtgtggagaagtatggaa |
409 |
Q |
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| T |
26776738 |
tccatattctaagcattgttttaactaattagtattgttttttaagtattttgaaatttgatgagcaggttatttcttatgggtgtggagaagtatggaa |
26776837 |
T |
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| Q |
410 |
agggtaaatggnnnnnnntctcagagaattatgtggtgacaaaaacacatacacaaatagcaagtcatgctcaaaaatacttcaaag |
496 |
Q |
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| T |
26776838 |
agggtaaatggaaaaaaatctcagagaattatgtggtgacaaaaacacatacacaaatagcaagtcatgctcaaaaatacttcaaag |
26776924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 26553979 - 26553931
Alignment:
| Q |
441 |
tgtggtgacaaaaacacatacacaaatagcaagtcatgctcaaaaatac |
489 |
Q |
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||||||||||| ||||| ||||||| ||||||| |||||||| |||||| |
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| T |
26553979 |
tgtggtgacaagaacacctacacaagtagcaagccatgctcagaaatac |
26553931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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