View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_15 (Length: 497)
Name: NF7741_low_15
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 47 - 489
Target Start/End: Original strand, 24791453 - 24791895
Alignment:
| Q |
47 |
caagatactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttattatgacgaatattgctcagtattttaacttc |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24791453 |
caagatactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttgttatgacgaatattgctcagtattttaacttc |
24791552 |
T |
|
| Q |
147 |
tgcgcgaaacgaactctcgagtttatcatctaactttttgttactccttatctttttcacagcaacatagcctaaaccatcgacctcaactcggtatact |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
24791553 |
tgcgcgaaacgaactctcgagtttatcatctaactttttgttactccttatctttttcacagcaacattgcctaaaccattgacttcaactcggtatacc |
24791652 |
T |
|
| Q |
247 |
gtgccaaatccgccacttccaataatattttgttctgtcattgatgagacaatgcttgattcattgaaactaagcctttgaaaggaaataagcttccatg |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24791653 |
gtgccaaatccgccacttccaataatattttgttctgtcattgatgagacaatgcttgattcattgaaactaagcctttgaaaggaaataagcttccatg |
24791752 |
T |
|
| Q |
347 |
aattatccaaaccttgctttcctttcttgaaaactttgataatcaagaaagcagcnnnnnnngccaaaaagattgctactatcacaaggcctataatcaa |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24791753 |
aattatccaaaccttgctttcctttcttgaaaactttgataatcaagaaagcagcaaaaaaagccaaaaagattgctactatcacaaggcctataatcaa |
24791852 |
T |
|
| Q |
447 |
accaatagaccatgatgatcctttgttttcactttgaacacca |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24791853 |
accaatagaccatgatgatcctttgttttcactttgaatacca |
24791895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 51 - 356
Target Start/End: Complemental strand, 33885836 - 33885531
Alignment:
| Q |
51 |
atactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttattatgacgaatattgctcagtattttaacttctgcg |
150 |
Q |
| |
|
||||||||| ||||| | ||||||||| ||||||||||||||||| || || ||||||||||| ||| ||||||||||||| |||||||||||| || |
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|
| T |
33885836 |
atactcatatacaagcatcatagaatcctcattagagatacaacataacaacttcacaatgtttcgatgtcgaatattgctcaatattttaacttccgcc |
33885737 |
T |
|
| Q |
151 |
cgaaacgaactctcgagtttatcatctaactttttgttactccttatctttttcacagcaacatagcctaaaccatcgacctcaactcggtatactgtgc |
250 |
Q |
| |
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||||||||| ||||| | | | | |||||||||||| | || |||||||||||||||||| |||||| ||||| ||| |||||||| || | |
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|
| T |
33885736 |
cgaaacgaagcttcgagctgttgccttgaatttttgttactcttgatttttttcacagcaacataggttaaaccgtcgactggaacgcggtataccgttc |
33885637 |
T |
|
| Q |
251 |
caaatccgccacttccaataatattttgttctgtcattgatgagacaatgcttgattcattgaaactaagcctttgaaaggaaataagcttccatgaatt |
350 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||| || || ||| |||| || ||||||| ||||||||||| ||||| |||| ||||||||| |
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| T |
33885636 |
caaatccaccacttccaatgatattctgttctgtcattgaggaaactatggttgactctgtgaaactcagcctttgaaatgaaatgagctcccatgaatt |
33885537 |
T |
|
| Q |
351 |
atccaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
33885536 |
ttccaa |
33885531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 356
Target Start/End: Original strand, 33895419 - 33895725
Alignment:
| Q |
51 |
atactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttattatgacgaatattgctcagtattttaacttctgcg |
150 |
Q |
| |
|
||||||||| ||||| | ||||||||| |||||||||||||||||||| || ||||||||||| |||| ||||||||||||| |||| ||||||| || |
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|
| T |
33895419 |
atactcatacacaagcatcatagaatcctcattagagatacaacacaacaacttcacaatgtttctatgtcgaatattgctcaatattctaacttcggcc |
33895518 |
T |
|
| Q |
151 |
cgaaacgaactctcgagtttatcatctaactttttgttactcctta-tctttttcacagcaacatagcctaaaccatcgacctcaactcggtatactgtg |
249 |
Q |
| |
|
||||||||| || || | | ||| ||| |||||||| | | | |||||||||||||||||| |||||| || || || |||||||| || |
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|
| T |
33895519 |
cgaaacgaagcttcaagctcttgccttaaatttctgttactcttgattttttttcacagcaacataggttaaaccgtcaactggaatgcggtataccgtt |
33895618 |
T |
|
| Q |
250 |
ccaaatccgccacttccaataatattttgttctgtcattgatgagacaatgcttgattcattgaaactaagcctttgaaaggaaataagcttccatgaat |
349 |
Q |
| |
|
|| ||||| |||||||| || |||||||||||||||||||| || || ||| |||||| |||| | ||||||||||| ||||| |||| |||||||| |
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|
| T |
33895619 |
ccgaatcctccacttccgatgatattttgttctgtcattgaggaaactatgtctgattctgtgaagtttagcctttgaaatgaaatgagctcccatgaat |
33895718 |
T |
|
| Q |
350 |
tatccaa |
356 |
Q |
| |
|
| ||||| |
|
|
| T |
33895719 |
tttccaa |
33895725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 347
Target Start/End: Complemental strand, 33910085 - 33909789
Alignment:
| Q |
51 |
atactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttattatgacgaatattgctcagtattttaacttctgcg |
150 |
Q |
| |
|
|||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||||||||| |||| ||||| |||||| ||||||||| || | | |
|
|
| T |
33910085 |
atactcgtaaacaagtagcattgtatcatcattagagatacaacataacaatttcacaatgtttctatgtcgaatgctgctcaatattttaacctcagtg |
33909986 |
T |
|
| Q |
151 |
cgaaacgaactctcgagtttatcatctaactttttgttactccttatctttttcacagcaacatagcctaaaccatcgacctcaactcggtatactgtgc |
250 |
Q |
| |
|
|||| || |||| || || | |||| |||||||| || |||||||||||||| ||||||||||| ||||||| ||||| || ||||| | |
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|
| T |
33909985 |
tgaaatgatttctcaagattttggtctagttttttgttttcccaaatctttttcacagctacatagcctaatacatcgacagaaactctataaactgtac |
33909886 |
T |
|
| Q |
251 |
caaatccgccacttccaataatattttgttctgtcattgatgagacaatgcttgattcattgaaactaagcctttgaaaggaaataagcttccatga |
347 |
Q |
| |
|
|| |||| |||||||| |||||||| | |||||||||||| || || ||| |||||| ||||| | || |||||||| ||| | || |||||||| |
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|
| T |
33909885 |
catatccaccacttcctataatattattttctgtcattgaagaaactatgtctgattctgtgaaatttagtctttgaaatgaagtgagtttccatga |
33909789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 275
Target Start/End: Complemental strand, 33916930 - 33916702
Alignment:
| Q |
50 |
gatactcatagacaagaagcatagaatcatcattagagatacaacacaataatttcacaatgttattatgacgaatattgctcagtattttaacttctgc |
149 |
Q |
| |
|
||||||| || ||||| || | |||||||||| | ||||||||||||| || ||||||||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33916930 |
gatactcgtatacaagtagtagagaatcatcacttgagatacaacacatcaacttcacaatgttgctatgccgaatattgctcagtatttcaacttctgc |
33916831 |
T |
|
| Q |
150 |
gcgaaacgaactctcgagtttatcatctaactttttgttact---ccttatctttttcacagcaacatagcctaaaccatcgacctcaactcggtatact |
246 |
Q |
| |
|
|||| ||| | | || || | |||||||||||| |||| ||| ||||| ||||| ||||||||||||||| | || || |||| ||||| || |
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|
| T |
33916830 |
aagaaatgaatccacaagcttctggtctaactttttgctacttcccctaatcttcttcactgcaacatagcctaaatcttcaacagcaacacggtacacg |
33916731 |
T |
|
| Q |
247 |
gtgccaaatccgccacttccaataatatt |
275 |
Q |
| |
|
| |||||||| || |||||||| ||||| |
|
|
| T |
33916730 |
gaaccaaatccaccgcttccaatgatatt |
33916702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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