View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_16 (Length: 485)
Name: NF7741_low_16
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 7294413 - 7294897
Alignment:
| Q |
1 |
atcttggaccagcttgttcatgtagaagcctaattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacctgatgag |
100 |
Q |
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| T |
7294413 |
atcttggaccagcttgttcatgtagaaacctaattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacctgatgag |
7294512 |
T |
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| Q |
101 |
tctgatgcatcctgtttgtgttgtgcataaatttctatgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaactagctgc |
200 |
Q |
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| T |
7294513 |
tctgatgcatcctgtttgtgttgtgcataaatttctatgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaactagctgc |
7294612 |
T |
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| Q |
201 |
aataagttcggttgataagttagttcacttgttaaaagaatttgatttgcctatggttcagaatagcacagcacctatgtagaattgtatttagtttctt |
300 |
Q |
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| T |
7294613 |
aataagttcggttgataagttagttcacttgttaaaagaatttgatttgcctatggttcagaatagcacagcacctatgtagaattgtatttagtttctt |
7294712 |
T |
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| Q |
301 |
taccaaatctggtttcgatagttataagatgacttacatgtagattttgacacgactgatataccactttatgcagtctgtgaatgatgcctttcatgta |
400 |
Q |
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| T |
7294713 |
taccaaatctggtttcgatagttataagatgacttacatgtagattttgacacgactgatataccactttatgcagtctgtgaatgatgcctttcatgta |
7294812 |
T |
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| Q |
401 |
aagtttgatacgggtgatagaaagtattgtgccgttctagtgaaagctgctatacattatgcttaatttcatatctcaatatttt |
485 |
Q |
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| T |
7294813 |
aagtttgatacgggtgatagaaagtattgtgccgttctagtgaaagctgctatacattatgcttaatttcatatctcaatatttt |
7294897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 445
Target Start/End: Original strand, 7290700 - 7291090
Alignment:
| Q |
31 |
taattcaattgcttttgcattgccaactattagtatcaagatgatgatgaggaatcctagacctgatgagtctgatgcatcctgtttgtgttgtgcataa |
130 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||| |||| ||||||| ||||| || ||| | | |||| |
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| T |
7290700 |
taattcaattgcttttccattgccaactattagtataaagatgatgatgaggaattttacaccccatgaatctgatgaatcctattagtgataagtataa |
7290799 |
T |
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| Q |
131 |
atttct-atgtgctctctgaaattctacttacataagcttctagctgttttggttttcataaactagctgcaataagttcggttgataagttagttcact |
229 |
Q |
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| T |
7290800 |
attttttatgtgctgt------------ttatataagcttctagccgttttagttttcataaactagctgcaataagcacag------agttagttcact |
7290881 |
T |
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| Q |
230 |
tgttaaaagaatttgatttgcctatggttcagaatagcacagcacctatgtagaattgtatttagtttctttaccaaatctggtttcgatagttataaga |
329 |
Q |
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| T |
7290882 |
tgctgaaaatatttgagtggccaatgatttagaatagtgcagcacctatctagtgttgtctttattttggttactaaatctggtttcaatagttataaga |
7290981 |
T |
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| Q |
330 |
tgacttacatgtagattttgacacgactgatataccactttatgcagtctgtgaatgatgcctttcatgtaaagtttgatacgggtgatagaaagtattg |
429 |
Q |
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| T |
7290982 |
tgccttacatgt-------gacacgagtggtagaccactttacgcagtctgtgaattatgcctttcatgtaaagtttgatatgagtgatagaaagtaatg |
7291074 |
T |
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