View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_18 (Length: 475)
Name: NF7741_low_18
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 16468683 - 16468241
Alignment:
| Q |
18 |
cttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatcattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16468683 |
cttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatcattc |
16468584 |
T |
|
| Q |
118 |
ataacatgagaaatttaagattaacattagtgttaatattaatagtaatggtgctggtttttgctctcatgttatatgaaaaataaaatttatgggtgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16468583 |
ataacatgagaaatttaagattaacattagtgttaatattaatagttatggtgctggtttttgctctcatgttatatgaaaaataaaatttatgcgtgtg |
16468484 |
T |
|
| Q |
218 |
ccatttatttgagaattttcacgtagtcagcacttagtaaacatataatactggatcaacaacaatggtgacggtcacataaaactccaaggttcaacaa |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16468483 |
ccatttgtttgagaattttcacgtagtcagcacttagtaaacatataatactggatcaacaacaatggtaacggtcacataaaactccaaggttcaacaa |
16468384 |
T |
|
| Q |
318 |
tagtgactaacataattcaagtattgaactttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgt |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16468383 |
tagtaactaacataattcaagtattgaactttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgt |
16468284 |
T |
|
| Q |
418 |
ttatgaaaatactttgagagatactaataaaatatagtttgat |
460 |
Q |
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| T |
16468283 |
ttatgaaaatactttgagagatactaataaaatatagtttgat |
16468241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 16474342 - 16474230
Alignment:
| Q |
326 |
aacataattcaagtattgaactttttaattcaagaggccttttattttcatcagtagatggatctctttaaatttaaaataggttttgttgtttatgaaa |
425 |
Q |
| |
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|||| |||| || |||| ||||||| ||||||||| ||||| |||| | || || || ||| |||||||||| |||||||||||| ||||||| |||| |
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| T |
16474342 |
aacaaaatttaaatattcaacttttgaattcaagat--cttttctttttagcactatatcgatatctttaaattgaaaataggttttcttgtttaagaaa |
16474245 |
T |
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| Q |
426 |
atactttgagagata |
440 |
Q |
| |
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||||||||||||||| |
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| T |
16474244 |
atactttgagagata |
16474230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 14319625 - 14319764
Alignment:
| Q |
26 |
attcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaatt----cagattctaatagtggtgatccatcattcataa |
121 |
Q |
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||||||||||| ||| |||| ||||||||||||| || | |||||||||| |||||||||| || |||||||||||||||| |||| |||| || |
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| T |
14319625 |
attcttcaacacgtgtttggtgattcttcaagacagtgagagcgattcacaagaagattaattagaacattttctaatagtggtgattcatcgttcaaaa |
14319724 |
T |
|
| Q |
122 |
catgagaaatttaagattaacattagtgttaatattaata |
161 |
Q |
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|
| T |
14319725 |
caggagaaatttaaggataacaatagtattaatattaata |
14319764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 14301826 - 14301969
Alignment:
| Q |
18 |
cttaatcaattcttcaacaatagttcggtggttcttcaagacagagatatcgattcacaataagattaattcagattctaatagtggtgatccatcattc |
117 |
Q |
| |
|
||||||| ||||||||||| ||| ||| ||||||||||||| || | |||||||||| |||||||| ||| |||||||||||| ||| |||| ||| |
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| T |
14301826 |
cttaatcgattcttcaacacctgtttggtaattcttcaagacagtgagagcgattcacaagaagattaaaacaggttctaatagtggcgattcatcgttc |
14301925 |
T |
|
| Q |
118 |
ataacatgagaaatttaagattaacattagtgttaatattaata |
161 |
Q |
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| |||| ||||| || ||| ||| | ||||||||||||||||| |
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| T |
14301926 |
agaacaggagaacttcaaggataaaaatagtgttaatattaata |
14301969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 16731796 - 16731861
Alignment:
| Q |
120 |
aacatgagaaatttaagattaacattagtgttaatattaatagtaatggtgctggtttttgctctc |
185 |
Q |
| |
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||||||||| ||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||| |
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| T |
16731796 |
aacatgagacatttagaaataacaatagtgttaatattaataatgatggtgaaggtttttgctctc |
16731861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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