View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_19 (Length: 469)
Name: NF7741_low_19
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 47308845 - 47308392
Alignment:
| Q |
1 |
tagcttaacacactaattttaaaagggttactcctagcaggtatgaaatacatgtttatatattattacgccgatttttaccctcaaacttatcaagcac |
100 |
Q |
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| T |
47308845 |
tagcttaacacactaattttaaaagggttactcctagcaggtatgaaatacatgtttatatattattacgccgatttttaccctcaaacttatcaagcac |
47308746 |
T |
|
| Q |
101 |
ctttttgccaaacatattgctacgcatcatttgagaatttgcttcgaccagttcctccaaggcattcttaatgaatctagcaccctgtttattaattaag |
200 |
Q |
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| T |
47308745 |
ctttttgccaaacatattgctacgcatcatttgagaatttgcttcgaccagttcctccaaggcattcttaatgaatctagcaccctgtttattaattaag |
47308646 |
T |
|
| Q |
201 |
aaaaacaaagttatcacagcggccaataaaccaaaccttctagcacaatgaagtatgcagctaatagaatattgagtttaatacagtgtttgtttataat |
300 |
Q |
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| T |
47308645 |
aaaaacaaagttatcacaacggccaataaaccaagccttctagcacaatgaagtatgcagctaatagaatattgagtttaatacagtgtttgtttataat |
47308546 |
T |
|
| Q |
301 |
ataatatactctacacatgccaagagaaagtgacaaactacatattccaataaaaaccatgtgttacatgtttgtttcaacagagcagttgccaacagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47308545 |
ataatatactctacacatgccaagagaaagtgacaaactacatattccaataaaaaccatgtgttacatgtttgtttcaacagagcagttgccaacagga |
47308446 |
T |
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| Q |
401 |
ccacaacaaataaactgcttaaaaattgaagagatgcatgatgcttacatgcag |
454 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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| T |
47308445 |
ccacaacaaataaactgcttaataattgaagagatgcatgatacttacgtgcag |
47308392 |
T |
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