View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_2 (Length: 840)
Name: NF7741_low_2
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 184136 - 184671
Alignment:
| Q |
1 |
aagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
184136 |
aagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaagcctgatgatgatttagaatattttaaaaaagcggc |
184235 |
T |
|
| Q |
101 |
cttggaagacgtggagtcggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggctacaatgcctggctcattattgaaaggaggagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
184236 |
cttggaagacgtggagtcggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggctacaatacctggctcattattgaaaagaggagta |
184335 |
T |
|
| Q |
201 |
ttgaattttaagaaaactccagaagtgaatattcctgtcagcgctataggtcgtgtacataagaaagatgtgaagaaggccagtgcaagtgcaatgcttg |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
184336 |
atgaattttaagaaaactccagaagttaatattcctgtcagtgctatagatcatgtacataagaaagatgtgaagaaggccagtgcaagagcaatgcttg |
184435 |
T |
|
| Q |
301 |
aaaagaacgtccaggagaattctactatattgactacgtttgatgtcaaagtcacccctgaatatagggaacttgcaagtgacagtttaaggtttacacc |
400 |
Q |
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| T |
184436 |
aaaagaacgtccaggagaattctactatattgactacgtttgatgtcaaagtcacccctgaatatagggaacttgcaagtgacagtttaaggtttacacc |
184535 |
T |
|
| Q |
401 |
cacaacattaaggaagagaaagggaaagaatctgctgatgaggccgacttcccatgcatggtagttaaaattcgaaattgaatcgtaaaatcttatgatc |
500 |
Q |
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| T |
184536 |
cacaacattaaggaagagaaagggaaagaatctgctgatgaggccgacttctcatgcatggtagttaaaattcgaaattgaatcgtaaaatcttatgatc |
184635 |
T |
|
| Q |
501 |
ttgcaaagtttccctcggtttatgagtagatgcaaa |
536 |
Q |
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| T |
184636 |
ttgcaaagtttccctcggtttatgagtagatgcaaa |
184671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 611 - 775
Target Start/End: Original strand, 184826 - 184991
Alignment:
| Q |
611 |
atgcatatatttgagatttaagaattttgtttaccaaatgaagtctaagtctcttggcacataacttttatccggccatgggaatactgctgggacataa |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
184826 |
atgcatatatttgagatttaagaattttgtttaccaaatgaagtctaagtctcttggcacataacttttatcaggccatgggaata---ctgggacataa |
184922 |
T |
|
| Q |
711 |
tgtagaaatgaagtgtaagtgtgtatggttt--gt--aaaattactttggctcgcatacttaactgtta |
775 |
Q |
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| T |
184923 |
tgtagaaatgaagtgtaagtgtgtatggttttagtaaaaaattactttggctcgcatacttaactgtta |
184991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 590220 - 590090
Alignment:
| Q |
1 |
aagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||| ||||| ||| ||| |
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| T |
590220 |
aagatttcctgttattgcagggacttgaacatgctattgctggtgctagtttatatttggtgaagcctgatgatgatttggaatatgttaaacaagtggc |
590121 |
T |
|
| Q |
101 |
cttggaagacgtggagtcggtcttgagcagg |
131 |
Q |
| |
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| ||||||| |||||||| |||||||||||| |
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| T |
590120 |
catggaagatgtggagtcagtcttgagcagg |
590090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 3014935 - 3015000
Alignment:
| Q |
246 |
ataggtcgtgtacataagaaagatgtgaagaaggccagtgca----agtgcaatgcttgaaaagaa |
307 |
Q |
| |
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||||||| | |||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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| T |
3014935 |
ataggtcctatacataagaaggatgtggagaaggccagtgcaagccagtgcaatgcttgaaaagaa |
3015000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 44607281 - 44607446
Alignment:
| Q |
1 |
aagatttcctgttattgtagggacttgaacatgctattgctggctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||||||| ||| |||||||||| ||||| |||||||||| || |
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| T |
44607281 |
aagatttcctgttatttcagggacttgaacacgctgttgctggcgctagtttacatgtggtgaagcctaatgatgatttgaaatatattaaaaaagcagc |
44607380 |
T |
|
| Q |
101 |
cttggaagacgtggagtcggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggc |
166 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||| |||||||| ||| || ||| ||| ||||| |
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| T |
44607381 |
cttggaagacgtggagtcagtcttgagcaggattgacaggagtggtgagggcgtttgtgtccaggc |
44607446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 44628805 - 44628952
Alignment:
| Q |
19 |
agggacttgaacatgctattgctggctctagtttatatgtggtgaaacctgatgatgatttagaatattttaaaaaagcggccttggaagacgtggagtc |
118 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||| |||||||||| || ||||||||||||||||| |
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| T |
44628805 |
aggggcttgaacatgctattgctggagctagtttatatgtggtaaagcctgatgatgatttggaatatattaaaaaagcagctttggaagacgtggagtc |
44628904 |
T |
|
| Q |
119 |
ggtcttgagcaggtttgagaggagtggcgagagcatttatgttcaggc |
166 |
Q |
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||||||||||||| |||| |||||||| ||| || ||| ||| ||||| |
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| T |
44628905 |
ggtcttgagcaggattgacaggagtggtgagggcgtttgtgtccaggc |
44628952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 44607703 - 44607774
Alignment:
| Q |
386 |
tttaaggtttacacccacaacattaaggaagagaaagggaaagaatctgctgatgaggccgacttcccatgc |
457 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| | ||| |||||| |
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| T |
44607703 |
tttaaggtttacatggccaacattaaggaggagaaaaagaaagaatctgctgatgaggcagtctttccatgc |
44607774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 44629225 - 44629279
Alignment:
| Q |
402 |
acaacattaaggaagagaaagggaaagaatctgctgatgaggccgacttcccatg |
456 |
Q |
| |
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||||||||||||| |||||| |||||||||||| |||||||| | ||||||||| |
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|
| T |
44629225 |
acaacattaaggaggagaaaaagaaagaatctgcggatgaggcagtcttcccatg |
44629279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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