View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7741_low_22 (Length: 445)
Name: NF7741_low_22
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_22 |
 | |
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| [»] scaffold0016 (3 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 33664325 - 33664734
Alignment:
| Q |
21 |
gagtttggtggtatataaaggggttccaattacaaattataattatccattaaggaat-agattattacaaatttataattaagcgtttctaaaaagata |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
33664325 |
gagttaggtggtatataaaggggttccaattacaaattataattatccactaagaaattagattatgataaatttataattaatcgtttctaaaaagata |
33664424 |
T |
|
| Q |
120 |
acaacactacctgtcnnnnnnn----caaaagataacaaaactaacttaaaagttcaacttttccaatgtatgagcattgactgctatatagctatacaa |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33664425 |
acaacactacctgtcaaaaaaagaaacaaaagataacaacactaacttaaaagttcaacttttccaatgtatgagcattgactgctatg--gctatacaa |
33664522 |
T |
|
| Q |
216 |
attcagttatattgcggttgccaaattataactgttgaaaatcgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagaacactcctttt |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
33664523 |
attcagttatattgtggttgccaaattataactgttcaaaattgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagtacactcttttt |
33664622 |
T |
|
| Q |
316 |
tcttcatgagctaaaaaacaaaagttatttacatagataaccttatcttttttactcattcaagatttctttatttttgcatttatcaaaaatatggatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
33664623 |
tcttcatgagctaaaaaacaaaagttatttacatagataaccttatcttttttactcattcaagatttcttcatttttgcatt--tctaaaatatggatg |
33664720 |
T |
|
| Q |
416 |
catacatatattat |
429 |
Q |
| |
|
|||||||||||||| |
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|
| T |
33664721 |
catacatatattat |
33664734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 33686127 - 33686536
Alignment:
| Q |
21 |
gagtttggtggtatataaaggggttccaattacaaattataattatccattaaggaat-agattattacaaatttataattaagcgtttctaaaaagata |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| | |||||||||||||| |||||||||||||||| |
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|
| T |
33686127 |
gagttaggtggtatataaaggggttccaattacaaattataattatccactaagaaattagattatgataaatttataattaatcgtttctaaaaagata |
33686226 |
T |
|
| Q |
120 |
acaacactacctgtcnnnnnnn----caaaagataacaaaactaacttaaaagttcaacttttccaatgtatgagcattgactgctatatagctatacaa |
215 |
Q |
| |
|
||||||||||||| | ||||||| ||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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|
| T |
33686227 |
acaacactacctgccaaaaaaagaaacaaaagagaacaacacttacttaaaagttcaactttttcaatgtatgagcaatgactgctatg--gctatacaa |
33686324 |
T |
|
| Q |
216 |
attcagttatattgcggttgccaaattataactgttgaaaatcgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagaacactcctttt |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33686325 |
attcagttatattgtggttgccaaattataactgttcaaaattgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagtacactcctttt |
33686424 |
T |
|
| Q |
316 |
tcttcatgagctaaaaaacaaaagttatttacatagataaccttatcttttttactcattcaagatttctttatttttgcatttatcaaaaatatggatg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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|
| T |
33686425 |
tcttcatgagctaaaaaacaaaagttatttacatagataaccttatcttttttactcattcaagatttcttcatttttgcatt--tctaaaatatggatg |
33686522 |
T |
|
| Q |
416 |
catacatatattat |
429 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33686523 |
catacatatattat |
33686536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 33674937 - 33675122
Alignment:
| Q |
21 |
gagtttggtggtatataaaggggttccaattacaaattataattatccattaaggaa-tagattattacaaatttataattaagcgtttctaaaaagata |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| | ||| |||||||||| |||||||||||||||| |
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|
| T |
33674937 |
gagttaggtggtatataaaggggttccaattacaaattataattatccactaagaaattagattatgataaaattataattaatcgtttctaaaaagata |
33675036 |
T |
|
| Q |
120 |
acaacactacctgt-----cnnnnnnncaaaagataacaaaactaacttaaaagttcaacttttccaatgtatgagcattgactgc |
200 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33675037 |
acaacactaccagtacaaaaaacaattcaaaagataacaacactaacttaaaagttcaacttttccaatgtatgagcattgactgc |
33675122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 378
Target Start/End: Original strand, 33693394 - 33693632
Alignment:
| Q |
143 |
aaaagataacaaaactaacttaaaagttcaacttttccaatgtatgagcattgactgctatatagctatacaaattcagttatattgcggttgccaaa-- |
240 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||| ||||| ||||||||||||| | |||||| ||| |||||||||||||| || ||||||||| |
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|
| T |
33693394 |
aaaagataaccacactaccttaaaagttcaacttttgcaatgaatgagcattgact-atttatagccatagaaattcagttatatcgcagttgccaaatt |
33693492 |
T |
|
| Q |
241 |
--ttataactgttgaaaatcgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagaacac--tcctttttcttcatgagctaaaaaacaa |
336 |
Q |
| |
|
|| |||| ||||||||| | |||| ||| ||||| | | ||||||||| |||||||||| |||| |||||||| |||||| ||||||||| |
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|
| T |
33693493 |
ctttttaacagttgaaaattggtcaaaacaatagcacactattgcttaccttgtcagaaaaatagtacacataaatttttctttatgagcaaaaaaacaa |
33693592 |
T |
|
| Q |
337 |
aagttatttacatagataaccttatcttttttactcattcaa |
378 |
Q |
| |
|
| |||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
33693593 |
atgttatttacatagata--gttatattttttactccttcaa |
33693632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 33675158 - 33675228
Alignment:
| Q |
281 |
tttttaccttgttagaaaaatagaacactc-ctttttcttcatgagctaaaaaacaaaagttatttacata |
350 |
Q |
| |
|
|||||||||||| || ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33675158 |
tttttaccttgtcagtaaaatagtacacttactttttcttcatgagcaaaaaaacaaaagttatttacata |
33675228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 33693353 - 33693413
Alignment:
| Q |
71 |
taaggaatagattattacaaatttataattaagcgtttctaaaaagataacaacactacct |
131 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
33693353 |
taaggaatagattataataaatttaaaattaagtgtttctaaaaagataaccacactacct |
33693413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 33693315 - 33693343
Alignment:
| Q |
21 |
gagtttggtggtatataaaggggttccaa |
49 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33693315 |
gagtttggtggtatataaaggggttccaa |
33693343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 103100 - 102793
Alignment:
| Q |
27 |
ggtggtatataaaggggttccaattacaaattataattatccattaaggaatagattattacaaatttataat---taagcgtttctaaaaagataacaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
103100 |
ggtggtatataaaggggttccaattacaaattataactattcattaagaaatagattattataaatttataataattaagcgtctctaaaaagataacaa |
103001 |
T |
|
| Q |
124 |
cactacctgtcnnnnnnn--caaaagataacaaaactaacttaaaagttcaacttttccaatgtatgagcattgactgctatatagctatacaaattcag |
221 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
103000 |
cactacctgtcaaaaaaaaacaaaatataacaacactaacttaaagtttcaacttttccaatgtatgagcattgactgctata--gctatacaaattcag |
102903 |
T |
|
| Q |
222 |
ttatattgcggttgccaaattataactgttgaaaatcgtacaaaggaatggcacagtgctttttaccttgttagaaaaatagaacactcctttttcttca |
321 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||| | ||||| || |||||||| |
|
|
| T |
102902 |
ttgtattgcggttgccaaattataactgttgaaaattgtacaaaacaatggcacactgctttttacctcgttagaaaaatggtacactgctctttcttca |
102803 |
T |
|
| Q |
322 |
tgagctaaaa |
331 |
Q |
| |
|
||||| |||| |
|
|
| T |
102802 |
tgagcaaaaa |
102793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 86359 - 86271
Alignment:
| Q |
156 |
actaacttaaaagttcaacttttccaatgtatgagcattgactgctatatagctatacaaattcagttatattgcggttgccaaattata |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| | || ||||| ||||||||||| |||||| || |||||||||||||| |
|
|
| T |
86359 |
actaatttaaaagttcaacttttccaatgaatgagcattgattatta-atagccatacaaattcaattatatcgcagttgccaaattata |
86271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 86432 - 86367
Alignment:
| Q |
55 |
aattataattatccattaaggaat-agattattacaaatttataattaagcgtttctaaaaagata |
119 |
Q |
| |
|
||||||||| |||||||||| ||| |||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
86432 |
aattataatcatccattaagtaattagattagtataaatttataattaagcttttctaaaaagata |
86367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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