View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_23 (Length: 430)
Name: NF7741_low_23
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 30888402 - 30888811
Alignment:
| Q |
1 |
agttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagctaactaatagttctaagt |
100 |
Q |
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| T |
30888402 |
agttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagctaactaatagttctaagt |
30888501 |
T |
|
| Q |
101 |
gttttgtttgagaacatatatacaagtaatctaaagtatgttcttggtttggttaatttttctatgttattaaccaagaacaatcatgagggaaattgtt |
200 |
Q |
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| T |
30888502 |
gttttgtttgagaacatatatacaagtaatctaaagtatgttcttggtttggttaatttttctatgttattagccaagaacaatcatgagggaaattgtt |
30888601 |
T |
|
| Q |
201 |
atgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgtgcgcgctcatgtatattttattatgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| || |
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| T |
30888602 |
atgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgt--gcgctcgtgtgtattttattatggca |
30888699 |
T |
|
| Q |
301 |
tctcttctattgtttatttgtg-ttattgtcattgttaagatatgtatttaattattggacacagcattgacacgttgacaccggtaaaaatttaatgag |
399 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30888700 |
tctcttctattgtttatttgtgtttattgtcattgttaagatatgtatttaattactggacacagcattgacacgtcgacaccggtaaaaatttaatgag |
30888799 |
T |
|
| Q |
400 |
acgagttaattg |
411 |
Q |
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| T |
30888800 |
acaagttaattg |
30888811 |
T |
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