View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_25 (Length: 413)
Name: NF7741_low_25
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 54 - 304
Target Start/End: Original strand, 25890651 - 25890901
Alignment:
| Q |
54 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactagaattttaacatatgaattagttttaaccattct |
153 |
Q |
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| T |
25890651 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactacaattttaacatatgagttagttttaaccattct |
25890750 |
T |
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| Q |
154 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
253 |
Q |
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| T |
25890751 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
25890850 |
T |
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| Q |
254 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
304 |
Q |
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| T |
25890851 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
25890901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 25892032 - 25892128
Alignment:
| Q |
299 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagtgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaat |
395 |
Q |
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| T |
25892032 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagcgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaat |
25892128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25887354 - 25887403
Alignment:
| Q |
1 |
acatctttgccgaatatgaatcaactctttaccatcaactgaatcaacat |
50 |
Q |
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| T |
25887354 |
acatctttgccgaatatgaattaactctttaccaccaactgaatcaacat |
25887403 |
T |
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