View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_26 (Length: 408)
Name: NF7741_low_26
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 43221062 - 43220687
Alignment:
| Q |
15 |
ctgtgttgcaattctatcttctttagcaactccagaggagtcaactgcaatcatagatcttattgaagctcgttgggatgagttggtcggagaaatgcca |
114 |
Q |
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| T |
43221062 |
ctgtgttgcaattctatcttctttagcaactccagagcagtcaactgcaatcatggatcttattgaagctcgttgggatgagttggtcggagaaatgcca |
43220963 |
T |
|
| Q |
115 |
ctaaaaattagttatcctgcatatgaaggtaaagactgggaaattaataccgggtttgataacaaaaatgtcacttggagttaccataatggaggatctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43220962 |
ctaaaaattagttatcctgcatatgaaggtaaagactgggaaattaataccgggtttgataacaaaaatgtcacttggagttaccataatggaggatctt |
43220863 |
T |
|
| Q |
215 |
ggccaggttttccctttatctcatcattcttagttattcttactttaaagaagttcatttaactcaggactttgtccgaatagcttcttcttcgcaaaac |
314 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
43220862 |
ggccaggttgtccctttatctcatcattcttagttattcttactttaaagaagttcatttaactcaggattttgtccgaatagcttcatcttcgcaaaac |
43220763 |
T |
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| Q |
315 |
tataaccaaagtgatatttggtacaaaatgataatgcatgccataactttgattttgagctgagtttaggtcttat |
390 |
Q |
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| T |
43220762 |
tataaccaaagtgatatttggtacaaaatgataatgcatgccatacctttgattttgagctgagtttaggtcttat |
43220687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 43230146 - 43229908
Alignment:
| Q |
15 |
ctgtgttgcaattctatcttctttagcaactccagaggagtcaactgcaatcatagatcttattgaagctcgttgggatgagttggtcggagaaatgcca |
114 |
Q |
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| T |
43230146 |
ctgtgttgcaattctttcttctttagcaactccagagcagtcaatggcaatcatggatcttattgaagctcgttgggatgagttggttggagaaatgccg |
43230047 |
T |
|
| Q |
115 |
ctaaaaattagttatcctgcatatgaaggtaaagactgggaaattaataccgggtttgataacaaaaatgtcacttggagttaccataatggaggatctt |
214 |
Q |
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|||||||||||||| |||||| ||| || | || ||| |||| ||| || | |||| ||||||| || ||||||||||||||||||||||||| |
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| T |
43230046 |
ctaaaaattagttaccctgcaatagaaagtcacgagtggcgaattgttactggctgtgatcccaaaaataccagatggagttaccataatggaggatctt |
43229947 |
T |
|
| Q |
215 |
ggccaggttttccctttatctcatcattcttagttattc |
253 |
Q |
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| T |
43229946 |
ggccaggttttccctttctctcatcatgcttagttattc |
43229908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 28864312 - 28864342
Alignment:
| Q |
190 |
tggagttaccataatggaggatcttggccag |
220 |
Q |
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| T |
28864312 |
tggagttaccataatggaggatcttggccag |
28864342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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