View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_28 (Length: 402)

Name: NF7741_low_28
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_28
NF7741_low_28
[»] chr2 (11 HSPs)
chr2 (18-385)||(39495677-39496044)
chr2 (40-385)||(39129079-39129424)
chr2 (266-385)||(27155117-27155236)
chr2 (213-289)||(21435737-21435813)
chr2 (108-334)||(39142872-39143092)
chr2 (254-298)||(39466956-39467000)
chr2 (248-328)||(44896497-44896577)
chr2 (222-338)||(39399191-39399304)
chr2 (266-343)||(39427855-39427932)
chr2 (246-298)||(39479381-39479433)
chr2 (268-298)||(39199682-39199712)
[»] chr8 (1 HSPs)
chr8 (224-299)||(44951528-44951600)
[»] chr5 (1 HSPs)
chr5 (258-299)||(17058727-17058768)
[»] chr6 (1 HSPs)
chr6 (242-298)||(16112237-16112293)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 39496044 - 39495677
Alignment:
Q  18 gtggtgttggtggtggttctgataagcggcacacatcatcgtcagagaaaagtacttggccttcagaagtgaggaatccagtttcttatgatgatgaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39496044 gtggtgttggtggtggttctgataagcggcacacatcatcgtcagagaaaagtacttggccttcagaagtgaggaatccagtttcttatgatgatgaaga 39495945  T
Q  118 tgtccctttgtcacaaaggttatcccggatgttgaattctggaacatggagtaccgaccgtgatgttactcttaagaagaggcataatactgctctaatg 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39495944 tgtccctttgtcacaaaggttatcccggatgttgagttctggaacatggagtaccgaccgtgatgttactcttaagaagaggcataatactgctttaatg 39495845  T
Q  218 tcattgccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495844 tcattgccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagata 39495745  T
Q  318 aagatgatactcctttgtcgaggagacttgcaatgtcggttggtaaatctgctgataaatcactttct 385  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  39495744 aagatgatactcctttgtcgaggagacttgcaatgccggttggtaaatctgattataaatcactttct 39495677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 40 - 385
Target Start/End: Original strand, 39129079 - 39129424
Alignment:
Q  40 taagcggcacacatcatcgtcagagaaaagtacttggccttcagaagtgaggaatccagtttcttatgatgatgaagatgtccctttgtcacaaaggtta 139  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  39129079 taagcggcacacatcatggtcagagaaaattactcagccttcagaagtgaggaatccagtttcttatgatgatgatgatgtctctttgtcacaaaggtta 39129178  T
Q  140 tcccggatgttgaattctggaacatggagtaccgaccgtgatgttactcttaagaagaggcataatactgctctaatgtcattgccagttaagaggccat 239  Q
    |||||||||| | ||||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  39129179 tcccggatgtcgcattctggaacatggactaccaaccgtgatgttcctattaagaagaggcataatactgctccagtgtcattgccagttaagagaccat 39129278  T
Q  240 tatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagataaagatgatactcctttgtcgag 339  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||    
T  39129279 tatttgacaacagaagttccttgaacacttctgttaagaaatcaaaggtgttaccatatgataatcaacgtaaagataaagacgatactcctttgtcgag 39129378  T
Q  340 gagacttgcaatgtcggttggtaaatctgctgataaatcactttct 385  Q
    ||| ||||||||| | |||||||||||||||||||| |||||||||    
T  39129379 gagccttgcaatgccagttggtaaatctgctgataagtcactttct 39129424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 266 - 385
Target Start/End: Complemental strand, 27155236 - 27155117
Alignment:
Q  266 acttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagataaagatgatactcctttgtcgaggagacttgcaatgtcggttggtaaat 365  Q
    |||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  27155236 acttgtgttaagaaatcaaaagtgtcaccatatgataatcaacgtaaagataaagacgatactcctttgtcgacgagacttgcaatgccggttggtaaat 27155137  T
Q  366 ctgctgataaatcactttct 385  Q
    |||| ||||| |||||||||    
T  27155136 ctgccgataagtcactttct 27155117  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 21435813 - 21435737
Alignment:
Q  213 taatgtcattgccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtg 289  Q
    |||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  21435813 taatatcattgccagttaagatgccattatttgacaacagaagctccttgaacacttctgttaggaaatcaaaggtg 21435737  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 334
Target Start/End: Original strand, 39142872 - 39143092
Alignment:
Q  108 atgatgaagatgtccctttgtcacaaaggttatcccggatgttgaattctggaacatggagtaccgaccgtgatgttactcttaagaagaggcataatac 207  Q
    ||||||| ||||| |||||||||  |||||||||||  |||| |||||  | |||| ||  ||   |||||||| || ||||||||||||||| ||   |    
T  39142872 atgatgatgatgttcctttgtcaagaaggttatcccatatgtcgaatttggtaacacggtttagtaaccgtgatattcctcttaagaagaggcgta---c 39142968  T
Q  208 tgctctaatgtcattgccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaa 307  Q
    ||||  |||| ||||| |||| ||||||||||| |   | ||||| |||||||||||   ||||||| ||||||||||||  || |  |||| |||||||    
T  39142969 tgctacaatgccattgtcagtcaagaggccatttt---acaacagcagttccttgaatgattctgttgagaaatcaaaggcatcgcagtatggtaatcaa 39143065  T
Q  308 cataaagataaagatgatactcctttg 334  Q
     ||||||| ||||||||| ||||||||    
T  39143066 gataaagaaaaagatgatgctcctttg 39143092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 39466956 - 39467000
Alignment:
Q  254 agttccttgaacacttctgttaagaaatcaaaggtgtcaccatat 298  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||    
T  39466956 agttccttgaacatttctgttaagaaatccaaggtgtcaccatat 39467000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 44896577 - 44896497
Alignment:
Q  248 aacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagataaagatgatact 328  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||| ||||| || | ||||  |  |||||||||||||||||    
T  44896577 aacagaaattccttgcacaattctgttaagaaatcaaaggtgttaccatgtgatgatcatgacgaagataaagatgatact 44896497  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 39399304 - 39399191
Alignment:
Q  222 tgccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagataaaga 321  Q
    |||||||||||||||   | ||||||||||| | ||||||| ||| ||||||||||||||  ||| |||||||||||  | ||||| |  |||| |||||    
T  39399304 tgccagttaagaggc---tgtttgataacagcaattccttgcacatttctgttaagaaattgaagatgtcaccatattatgatcaaaacgaagacaaaga 39399208  T
Q  322 tgatactcctttgtcga 338  Q
    ||||| ||||| |||||    
T  39399207 tgatattccttcgtcga 39399191  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 39427932 - 39427855
Alignment:
Q  266 acttctgttaagaaatcaaaggtgtcaccatatgttaatcaacataaagataaagatgatactcctttgtcgaggaga 343  Q
    |||||||||||||||| |||||||| |||||||| |||||    ||||||||||||   |||||||||||| ||||||    
T  39427932 acttctgttaagaaattaaaggtgttaccatatgataatcccagtaaagataaagacagtactcctttgtcaaggaga 39427855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 39479433 - 39479381
Alignment:
Q  246 ataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatat 298  Q
    ||||||| | |||| || ||| |||||||||||||||||||||||||||||||    
T  39479433 ataacaggaattccatgcacatttctgttaagaaatcaaaggtgtcaccatat 39479381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 39199712 - 39199682
Alignment:
Q  268 ttctgttaagaaatcaaaggtgtcaccatat 298  Q
    |||||||||||||||||||||||||||||||    
T  39199712 ttctgttaagaaatcaaaggtgtcaccatat 39199682  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 44951600 - 44951528
Alignment:
Q  224 ccagttaagaggccattatttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatatg 299  Q
    |||||||||||||   ||||||||||||| | |||||||| || ||||||||||||||||||| ||||||||||||    
T  44951600 ccagttaagaggc---tatttgataacagcaattccttgatcatttctgttaagaaatcaaagatgtcaccatatg 44951528  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 17058727 - 17058768
Alignment:
Q  258 ccttgaacacttctgttaagaaatcaaaggtgtcaccatatg 299  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  17058727 ccttgcacatttctgttaagaaatcaaaggtgtcaccatatg 17058768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 16112237 - 16112293
Alignment:
Q  242 tttgataacagaagttccttgaacacttctgttaagaaatcaaaggtgtcaccatat 298  Q
    ||||||||||| | ||||||||||| ||| |||||||||  |||| |||||||||||    
T  16112237 tttgataacagcaattccttgaacatttccgttaagaaacaaaagatgtcaccatat 16112293  T

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