View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_29 (Length: 391)
Name: NF7741_low_29
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 25084275 - 25083899
Alignment:
| Q |
1 |
aaaggccattgatttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaactaaaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25084275 |
aaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgcacctaactaaaat |
25084176 |
T |
|
| Q |
101 |
atttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
25084175 |
atttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaaggggagtgaaatagtaacaaaaga |
25084076 |
T |
|
| Q |
201 |
gattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatggtttct |
300 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25084075 |
gatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatggtttct |
25083976 |
T |
|
| Q |
301 |
cttgatgggaagacaaatattaatttctccgatgcgccttttcctgatggtgtagagtggccttgatatattattcc |
377 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25083975 |
cttgatgggaagataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatattattcc |
25083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 372
Target Start/End: Complemental strand, 25071368 - 25071000
Alignment:
| Q |
2 |
aaggccattgatttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaa-ctaaaat |
100 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| || ||||||| |
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| T |
25071368 |
aaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgcaccaaaactaaaat |
25071269 |
T |
|
| Q |
101 |
atttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaaga |
200 |
Q |
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||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
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| T |
25071268 |
attacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaatagtaacaaagga |
25071169 |
T |
|
| Q |
201 |
gattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatggtttct |
300 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
25071168 |
gatattgaatgtcatcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattcaccttatgatatggttact |
25071069 |
T |
|
| Q |
301 |
cttgatgggaagacaaatattaatttctccgatgcgccttttcctgatggtgtagagtggccttgatatatt |
372 |
Q |
| |
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||||||||||||||| |||||||||||| ||| |||||| ||||| | |||||| ||||||||||||||| |
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| T |
25071068 |
cttgatgggaagaca---attaatttctccaatgtgcctttccctgaagatgtagattggccttgatatatt |
25071000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 25062666 - 25062294
Alignment:
| Q |
1 |
aaaggccattgatttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaa-ctaaaa |
99 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||| ||| || |
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| T |
25062666 |
aaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcacctaaactataa |
25062567 |
T |
|
| Q |
100 |
tatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaag |
199 |
Q |
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| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
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| T |
25062566 |
tgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaatagtaacaaagg |
25062467 |
T |
|
| Q |
200 |
agattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatggtttc |
299 |
Q |
| |
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| || |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
25062466 |
aaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagattcaccttatgatatagtttc |
25062367 |
T |
|
| Q |
300 |
tcttgatgggaagacaaatattaatttctccgatgcgccttttcctgatggtgtagagtggccttgatatatt |
372 |
Q |
| |
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||||||||||||||||| | |||||| |||| | | |||||| ||||| | |||||| ||||||||||||||| |
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| T |
25062366 |
tcttgatgggaagacaactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatatt |
25062294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 83 - 377
Target Start/End: Complemental strand, 25089975 - 25089677
Alignment:
| Q |
83 |
tatgcacctaa-ctaaaatatttcaaatttgtttatcaataat---ttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgagg |
178 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||||| ||| || || | ||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
25089975 |
tatgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgagg |
25089876 |
T |
|
| Q |
179 |
ggagcgaaatagtaacaaaagagattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaaga |
278 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25089875 |
ggagtgaaatagtaacaaaggagatattgaatgtcataaagaaagcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaaga |
25089776 |
T |
|
| Q |
279 |
ttctccttatgatatggtttctcttgatgggaagacaaatattaatttctccgatgcgccttttcctgatggtgtagagtggccttgatatattattcc |
377 |
Q |
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| | ||||||||||||||||||||||| |||||||||| | ||||||||||| ||| |||||||||| | ||||||||||||||||||||||| ||||| |
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|
| T |
25089775 |
tacaccttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatatgattcc |
25089677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 25058455 - 25058169
Alignment:
| Q |
2 |
aaggccattgatttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcattt--gtatgcaccta----act |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| | |||||| | ||||| |||| | | |
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| T |
25058455 |
aaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccctatattaat |
25058356 |
T |
|
| Q |
96 |
aaa-atatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaac |
194 |
Q |
| |
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||| |||| ||||||||| | ||||| |||||||||| |||||| |||||| ||||||||||| ||||| | || |||||||| ||||| || | |
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| T |
25058355 |
aaatatatatcaaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtgaaatggtgtc |
25058256 |
T |
|
| Q |
195 |
aaaagagattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattc |
281 |
Q |
| |
|
||| || || | || || ||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
25058255 |
aaaggaaataattaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattc |
25058169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25090567 - 25090491
Alignment:
| Q |
1 |
aaaggccattgatttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctc |
77 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
25090567 |
aaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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