View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7741_low_30 (Length: 387)
Name: NF7741_low_30
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7741_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 2759852 - 2759471
Alignment:
| Q |
1 |
gctatcaagtttgggcatattaaagactactatagatgagatggaatcaagcttgctactttataaagaggaagaacaccataattgacagttacttgta |
100 |
Q |
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| T |
2759852 |
gctatcaagtttgggcatattaaagactactatagatgagatggaatcaagcttgctactttataaagaggaagaacaccataattgacagttacttgta |
2759753 |
T |
|
| Q |
101 |
ggaaagttatttatgatcttgaaaggttgtatacacgacgacttagcatgatccttcattgtgaatgtataaatacttgtaaattgtttcattcattaac |
200 |
Q |
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| T |
2759752 |
ggaaagttatttatgatcttgaaaggttgtatacatgacgacttagcatgatccttcattgtgaatgtataaatacttgtaaatggtttccttcattaac |
2759653 |
T |
|
| Q |
201 |
caatcataaaattatgattcatcttgcaatattttctctc--ttctcttgttttctatcaatctttgagtctctcaacatatgatatcacgagcctttcg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2759652 |
caatcataaaattatgattcatcttgcaatattttctctcttttctcttgttttctatcaatctttgagtctctcaacatatgatatcacgagcctttcg |
2759553 |
T |
|
| Q |
299 |
atataagagtgtttcttccgcatctattcttccatcgatcctcgtaatgccaccattataagaacttatgaggttcttctca |
380 |
Q |
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||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2759552 |
atataagagtgtttcttccacaactattcttccatcgatcctcataatgccaccattataagaacttatgaggttcttctca |
2759471 |
T |
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