View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7741_low_34 (Length: 368)

Name: NF7741_low_34
Description: NF7741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7741_low_34
NF7741_low_34
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-354)||(134427-134768)
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-354)||(312254-312595)
scaffold0002 (13-354)||(327708-328049)
[»] chr4 (17 HSPs)
chr4 (64-354)||(8654697-8654987)
chr4 (18-354)||(3129560-3129893)
chr4 (98-354)||(47541151-47541406)
chr4 (167-354)||(7662966-7663153)
chr4 (149-354)||(2631624-2631829)
chr4 (13-354)||(23873049-23873390)
chr4 (13-354)||(20675248-20675589)
chr4 (204-354)||(55298846-55298996)
chr4 (158-354)||(8486699-8486895)
chr4 (14-84)||(7662882-7662953)
chr4 (13-71)||(55299121-55299179)
chr4 (286-354)||(49926112-49926180)
chr4 (13-55)||(9690947-9690989)
chr4 (13-55)||(36183062-36183104)
chr4 (293-354)||(4524478-4524539)
chr4 (286-354)||(19647935-19648003)
chr4 (286-354)||(29553586-29553654)
[»] chr5 (9 HSPs)
chr5 (13-354)||(10486493-10486834)
chr5 (13-354)||(34481173-34481515)
chr5 (237-354)||(587742-587859)
chr5 (75-354)||(35122341-35122620)
chr5 (13-58)||(20208292-20208337)
chr5 (13-53)||(34338411-34338451)
chr5 (296-337)||(23923092-23923133)
chr5 (306-343)||(27795720-27795757)
chr5 (306-354)||(31862819-31862867)
[»] chr7 (15 HSPs)
chr7 (13-354)||(15653278-15653619)
chr7 (31-305)||(46623968-46624242)
chr7 (13-354)||(13440279-13440620)
chr7 (13-354)||(12378301-12378639)
chr7 (279-354)||(45943077-45943152)
chr7 (222-345)||(43105546-43105669)
chr7 (16-55)||(8752965-8753004)
chr7 (280-355)||(41339750-41339825)
chr7 (15-57)||(12308690-12308732)
chr7 (280-354)||(19728713-19728787)
chr7 (13-55)||(23887609-23887651)
chr7 (13-55)||(23898785-23898827)
chr7 (308-346)||(27723973-27724011)
chr7 (321-354)||(46623931-46623964)
chr7 (286-354)||(45992802-45992870)
[»] chr1 (16 HSPs)
chr1 (60-354)||(21528387-21528685)
chr1 (43-352)||(36306012-36306321)
chr1 (18-354)||(37530792-37531126)
chr1 (13-354)||(48073004-48073345)
chr1 (204-354)||(32353061-32353211)
chr1 (270-354)||(48265548-48265632)
chr1 (279-354)||(30970447-30970522)
chr1 (13-71)||(32352883-32352941)
chr1 (280-354)||(16873332-16873406)
chr1 (13-58)||(20796190-20796235)
chr1 (13-58)||(26721155-26721200)
chr1 (13-54)||(28358416-28358457)
chr1 (14-63)||(29139964-29140013)
chr1 (13-58)||(39430799-39430844)
chr1 (13-58)||(49264537-49264582)
chr1 (286-354)||(25504839-25504907)
[»] chr3 (19 HSPs)
chr3 (67-354)||(49731559-49731846)
chr3 (13-354)||(30166917-30167258)
chr3 (148-354)||(2813208-2813414)
chr3 (13-354)||(29309634-29309975)
chr3 (13-354)||(6176051-6176392)
chr3 (230-354)||(9379323-9379447)
chr3 (279-354)||(23601999-23602074)
chr3 (287-354)||(25872955-25873022)
chr3 (279-336)||(8943596-8943653)
chr3 (14-58)||(35537290-35537334)
chr3 (306-345)||(48569905-48569944)
chr3 (280-354)||(14867625-14867699)
chr3 (308-346)||(46248738-46248776)
chr3 (12-57)||(17039572-17039617)
chr3 (13-57)||(8130474-8130518)
chr3 (293-345)||(18368808-18368860)
chr3 (13-57)||(19875766-19875810)
chr3 (13-57)||(21740096-21740140)
chr3 (13-57)||(46190015-46190059)
[»] chr8 (10 HSPs)
chr8 (13-354)||(7452578-7452919)
chr8 (149-354)||(16420719-16420924)
chr8 (280-345)||(12134563-12134628)
chr8 (302-354)||(19384572-19384624)
chr8 (297-343)||(13879344-13879390)
chr8 (13-55)||(37165694-37165736)
chr8 (13-58)||(36157676-36157721)
chr8 (13-57)||(4331713-4331757)
chr8 (295-343)||(7555684-7555732)
chr8 (13-57)||(17659354-17659398)
[»] chr2 (16 HSPs)
chr2 (13-354)||(45421745-45422087)
chr2 (18-354)||(13550350-13550686)
chr2 (13-350)||(26894185-26894522)
chr2 (13-350)||(26899624-26899961)
chr2 (204-354)||(43627725-43627875)
chr2 (18-275)||(13550882-13551139)
chr2 (255-354)||(31085452-31085551)
chr2 (255-354)||(33548098-33548197)
chr2 (296-355)||(36804137-36804196)
chr2 (296-354)||(22052853-22052911)
chr2 (307-355)||(36804352-36804400)
chr2 (11-55)||(33583922-33583966)
chr2 (297-343)||(40176905-40176951)
chr2 (13-58)||(9668579-9668624)
chr2 (13-54)||(11196877-11196918)
chr2 (149-190)||(26679225-26679266)
[»] scaffold0131 (1 HSPs)
scaffold0131 (18-228)||(4127-4337)
[»] chr6 (17 HSPs)
chr6 (18-354)||(26205574-26205910)
chr6 (22-354)||(25318080-25318412)
chr6 (13-354)||(23347040-23347381)
chr6 (204-354)||(15674051-15674205)
chr6 (299-354)||(33630323-33630378)
chr6 (321-354)||(1683266-1683299)
chr6 (13-57)||(2923394-2923438)
chr6 (11-55)||(13497695-13497739)
chr6 (13-57)||(32186206-32186250)
chr6 (280-343)||(4474935-4474998)
chr6 (279-345)||(5041753-5041819)
chr6 (13-57)||(11060435-11060479)
chr6 (13-57)||(17078763-17078807)
chr6 (13-57)||(18051022-18051066)
chr6 (286-354)||(19255866-19255934)
chr6 (13-57)||(19350467-19350511)
chr6 (286-354)||(33640144-33640212)
[»] scaffold0418 (2 HSPs)
scaffold0418 (167-354)||(7901-8088)
scaffold0418 (14-84)||(8101-8170)
[»] scaffold0179 (2 HSPs)
scaffold0179 (13-58)||(8054-8099)
scaffold0179 (13-58)||(12988-13033)
[»] scaffold0112 (1 HSPs)
scaffold0112 (280-354)||(15490-15564)


Alignment Details
Target: scaffold0029 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 134427 - 134768
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||    
T  134427 gttggaggttgggggccggagtgtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatctt 134526  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134527 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 134626  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  134627 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 134726  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  134727 ggaggacttgttagcggagtgtagggctttacttcttgatgt 134768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 312254 - 312595
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||    
T  312254 gttggaggttgggggccggagtgtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatctt 312353  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312354 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 312453  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  312454 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 312553  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  312554 ggaggacttgttagcggagtgtagggctttacttcttgatgt 312595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 327708 - 328049
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||    
T  327708 gttggaggttgggggccggagtgtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatctt 327807  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327808 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 327907  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  327908 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 328007  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  328008 ggaggacttgttagcggagtgtagggctttacttcttgatgt 328049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 64 - 354
Target Start/End: Original strand, 8654697 - 8654987
Alignment:
Q  64 tcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg 163  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654697 tcttaggggtagtgttggtgctggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg 8654796  T
Q  164 tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654797 tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 8654896  T
Q  264 agcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654897 agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 8654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 3129560 - 3129893
Alignment:
Q  18 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || ||||||||||||| ||||||    
T  3129560 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggc 3129659  T
Q  118 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 217  Q
    |||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  3129660 taggagggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaaca 3129759  T
Q  218 gagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagg 317  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||||   ||||||  |||||||||||||||| | ||||||| ||||||||||     
T  3129760 gagaataagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag- 3129858  T
Q  318 acttgttagcggagtgtagggctttacttcttgatgt 354  Q
       ||||||||||||||||||||||||||||||||||    
T  3129859 --atgttagcggagtgtagggctttacttcttgatgt 3129893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 98 - 354
Target Start/End: Complemental strand, 47541406 - 47541151
Alignment:
Q  98 tggtttgttgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc 197  Q
    ||||||||||||| ||||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||      
T  47541406 tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt 47541308  T
Q  198 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag 297  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| |    
T  47541307 gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg 47541208  T
Q  298 gttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
     ||||||| |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  47541207 tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttgatgt 47541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 7662966 - 7663153
Alignment:
Q  167 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 266  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  267 agtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||  |||| |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7663153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 149 - 354
Target Start/End: Complemental strand, 2631829 - 2631624
Alignment:
Q  149 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 248  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  2631829 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 2631730  T
Q  249 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 348  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||    
T  2631729 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct 2631630  T
Q  349 tgatgt 354  Q
    ||||||    
T  2631629 tgatgt 2631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 23873049 - 23873390
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| |||||||||| | | || || ||||| |  || || |||||||  ||||      
T  23873049 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttgaggatcag 23873148  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| |   |||| | ||||||||  ||||||||| | ||||| | |||| | ||||| || ||  |  || |||||||||    
T  23873149 gtgttgaggagagttggtgatggggtcgatacttcgttttggtctgataggtggattggggaggctcctctgtgtgtgcggtttaggcggttgtttgagt 23873248  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||  |||| ||||||    
T  23873249 taacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatggcagtggga 23873348  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  ||||||||||||||||||||||||||    
T  23873349 ggaggagttgctagatgagtgtagggctttacttcttgatgt 23873390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 20675589 - 20675248
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    |||||||||||||||||| || ||||| || ||||||  ||||||||| || ||||||| ||| || || ||||| |  || || |||||||  ||||      
T  20675589 gttggaggttgggggccgaagagtttcttgctggtggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcag 20675490  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | | | || | ||||||||  ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||    
T  20675489 gtgttgaggagagttggtgatggggttgacacttcgttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 20675390  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| ||| || ||||| |||||| | | |||||||||||||| ||||||||   |||||||||||||||||||||| |||| ||||||    
T  20675389 taacagagaataagtctatatccgtggccgacttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtggga 20675290  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| | |  ||||||||| ||||||||||||||||    
T  20675289 ggaggagttgcttgatgagtgtaggactttacttcttgatgt 20675248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 55298996 - 55298846
Alignment:
Q  204 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 303  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  304 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 55298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 354
Target Start/End: Original strand, 8486699 - 8486895
Alignment:
Q  158 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 257  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  258 attcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||| | ||||||||   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   |||||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgt 8486895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7662882 - 7662953
Alignment:
Q  14 ttggaggtt-gggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtga 84  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  7662882 ttggaggttcgggggccggagtgtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtga 7662953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 55299179 - 55299121
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggg 71  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| ||||||||||    
T  55299179 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgtcttaggg 55299121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 49926112 - 49926180
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || ||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgt 49926180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 9690989 - 9690947
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    |||||||||||||||||||||||||||   |||||||||||||    
T  9690989 gttggaggttgggggccggagtgtttctcattggtggagggag 9690947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 36183104 - 36183062
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    |||||||||||||||||||||||||||   |||||||||||||    
T  36183104 gttggaggttgggggccggagtgtttctacttggtggagggag 36183062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 4524478 - 4524539
Alignment:
Q  293 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||| ||||||||||| |  | |||| ||||||||||||||| || ||||||||    
T  4524478 cgtaggttgtgggtgtgggaggagaatgtcttagaggagtgtagggcttttctgcttgatgt 4524539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 19648003 - 19647935
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 29553586 - 29553654
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  |||||||||||| ||||||| |||||||||| |||||||  |||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgt 29553654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 10486493 - 10486834
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |  | ||||||||||||| |    
T  10486493 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcat 10486592  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  10486593 gtggctaggagggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagt 10486692  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  10486693 taacatagaataagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtggga 10486792  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  10486793 ggaggacatgttagcggagtgtagggctttacttcttgatgt 10486834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 34481515 - 34481173
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggttt-gttgatct 111  Q
    ||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||||||  || | ||| | ||| |  || || |||||| |  ||||     
T  34481515 gttggaggttgggggccggagagtttcttgttggtggttggaggtgagtcgtcttagggtgagggatggagttggtggtagcggctggttttgaggatca 34481416  T
Q  112 tgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgag 211  Q
     |||   ||||| ||||| ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  | ||  || || ||||||||    
T  34481415 ggtgttgaggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgag 34481316  T
Q  212 ttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggg 311  Q
    |||||||||||||||| ||||||||||||| | ||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||    
T  34481315 ttaacagagaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtggg 34481216  T
Q  312 aggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||  ||| ||| |||||||||||||||||||||||||||    
T  34481215 aggaggggttgctagaggagtgtagggctttacttcttgatgt 34481173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 587859 - 587742
Alignment:
Q  237 tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 336  Q
    ||||| ||||||| |||||   ||||||||| ||||||| | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  337 ggctttacttcttgatgt 354  Q
    ||||||||||||||||||    
T  587759 ggctttacttcttgatgt 587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 354
Target Start/End: Original strand, 35122341 - 35122620
Alignment:
Q  75 gtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttagggga 174  Q
    |||||||||||| || | |||| |||||||  |||  ||||  ||||| ||| || ||||| ||| |||||||||||||||   |||||||||| |  ||    
T  35122341 gtgttggtgatgtagggggtggttggtttggggatagtgtgcttaggaaggtgggggatggtgctgatacgttgttttggtctcataggtggtttgatga 35122440  T
Q  175 tgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggg 274  Q
    |||||||||| |||  || || |||||| ||||||| ||| | ||||| ||    || ||||||||  |  |||| ||| ||||   ||||||| | |||    
T  35122441 tgttccttttagtgagcggtttcgtaggttgtttgacttagctgagaacaaaaccatttctgtggcgaatatgttctctcttgacctggagcagggaggg 35122540  T
Q  275 gttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||  |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| ||||||||    
T  35122541 gttgggtggaggtggagacgtaggttgtgggcttgggaggagactttattagaggagcttagggctttactgcttgatgt 35122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 20208292 - 20208337
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  20208292 gttggaggttgggggccggagttgttcgttttggtggagggaggtg 20208337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 34338451 - 34338411
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggaggg 53  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  34338451 gttggaggttgggggccggagtgtttcttcttggtggaggg 34338411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  296 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 337  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  306 tgtgggaggaggacttgttagcggagtgtagggcttta 343  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 31862867 - 31862819
Alignment:
Q  306 tgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||| ||||| || ||||||  ||||||||||||||||||    
T  31862867 tgtgggaggaggagttgttggcagagtgtgtggctttacttcttgatgt 31862819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 15653278 - 15653619
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| ||||||||||  |      
T  15653278 gttggaggttgggggccggagtgtgtcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccac 15653377  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  15653378 gtggctaggagggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagt 15653477  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    |||| ||||||||| | |||||| ||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||| ||||||| ||||||    
T  15653478 taacggagaataagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtggga 15653577  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||  ||||||||||||||||||||||||||||||||||    
T  15653578 ggaggagatgttagcggagtgtagggctttacttcttgatgt 15653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 46624242 - 46623968
Alignment:
Q  31 gagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttgga 130  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||||||| || || ||  |||| |||||||||| ||  ||||||||||||||| ||    
T  46624242 gagtgtgtcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttaga 46624143  T
Q  131 gatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta 230  Q
    |||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | |    
T  46624142 gatggttctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctca 46624043  T
Q  231 tgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggc 305  Q
    ||||||||||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624042 tgtctgtggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 13440620 - 13440279
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| |||||||||| | | || || ||||| |  || || |||||||  ||||      
T  13440620 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcag 13440521  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | |  ||| | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  13440520 gtgttgaggagagttggtgatggggttgttacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 13440421  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   ||||||||||||||||||| || |||  ||||||    
T  13440420 taacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtggga 13440321  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  |||||| |||||||||||||||||||    
T  13440320 ggaggagttgctagatgagtgttgggctttacttcttgatgt 13440279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 12378301 - 12378639
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    |||||||||||| |||| |||||| || ||||||||||||||||||||| || ||||||  || |  |||||||| |  ||||||||||||| |   | |    
T  12378301 gttggaggttggtggccagagtgtatcttgttggtggagggaggtgagttgtattagggaaaggggaggtgatggtggtagtggatggtttgatagccat 12378400  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||    |||||||||| ||||  ||| ||||   ||||||||  ||||||||| |||||||||||||| | ||||  || |  | ||| ||||||||||    
T  12378401 gtgttgcggagggttggtgatgaggctgatacaacgttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagt 12378500  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    |||  ||||||||| | |||||||||||| | ||||| | |||| | ||| ||| |||||||| ||||| |||| |||| || |||||||||| ||||||    
T  12378501 taatggagaataagatcatgtctgtggcaaatttgttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtggga 12378600  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||  |||||||||||||||||||   ||||||||||||    
T  12378601 ggaggagatgttagcggagtgtagggc---acttcttgatgt 12378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 45943152 - 45943077
Alignment:
Q  279 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 45943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  222 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 321  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  322 gttagcggagtgtagggctttact 345  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 8752965 - 8753004
Alignment:
Q  16 ggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  8752965 ggaggttgggggccggagtgtctcttgttggtggagggag 8753004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 41339825 - 41339750
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 355  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||  ||||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttactatttgatgtc 41339750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 12308690 - 12308732
Alignment:
Q  15 tggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||| ||| | |||||||||||||||    
T  12308690 tggaggttgggggccggagtggttcttattggtggagggaggt 12308732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 19728787 - 19728713
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||  ||||| ||||||||    
T  19728787 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggtcttactacttgatgt 19728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23887651 - 23887609
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    ||||||||||||||| ||||||||||| | |||||||||||||    
T  23887651 gttggaggttgggggtcggagtgtttcttcttggtggagggag 23887609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23898827 - 23898785
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    ||||||||||||||| ||||||||||| | |||||||||||||    
T  23898827 gttggaggttgggggtcggagtgtttcttcttggtggagggag 23898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  308 tgggaggaggacttgttagcggagtgtagggctttactt 346  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 46623964 - 46623931
Alignment:
Q  321 tgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||| ||||||||||||||||||||||||||    
T  46623964 tgttagcagagtgtagggctttacttcttgatgt 46623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 45992870 - 45992802
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 45992802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 60 - 354
Target Start/End: Complemental strand, 21528685 - 21528387
Alignment:
Q  60 gtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctaatacgttgttttggttgga 159  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  21528685 gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga 21528586  T
Q  160 taggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat 259  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||    
T  21528585 taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat 21528486  T
Q  260 tcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggag----tgtagggctttacttcttgatgt 354  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||  ||||||||||||| ||||||||| |     ||||||||||||||||||||||    
T  21528485 tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttgatgt 21528387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 352
Target Start/End: Complemental strand, 36306321 - 36306012
Alignment:
Q  43 ttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctaat 142  Q
    ||||||||||||||||||||||||||| | ||||||| |||| || ||  |||| |||||||| |  |  |||||||||||||||||||||||  || ||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  143 acgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag 242  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| | |||| ||||||||    
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  243 acttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttt 342  Q
    ||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| |||||||||||||||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  343 acttcttgat 352  Q
    ||||||||||    
T  36306021 acttcttgat 36306012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37531126 - 37530792
Alignment:
Q  18 aggttgggggccggagtgtttcgt-gttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtgg 116  Q
    |||||||||||||||| ||||| | ||||||||  ||||||||||||||||||||  || | ||| ||||| |  || || |||||||  ||||  |||     
T  37531126 aggttgggggccggagagtttcattgttggtggtcggaggtgagtcgtcttagggtgagggatggagatggtggtagcggctggtttgaggatcaggtg- 37531028  T
Q  117 ctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaac 216  Q
      ||||| ||||  ||||| ||| |||| | ||||||||  ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||    
T  37531027 --aggagagttgatgatggggctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaac 37530930  T
Q  217 agagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggag 316  Q
    ||||||||||  ||||| ||||||||||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| ||||||||||    
T  37530929 agagaataagactatgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggag 37530830  T
Q  317 gacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |  ||| ||| |||||||||||||||||||||||||||    
T  37530829 gggttgctagaggagtgtagggctttacttcttgatgt 37530792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 48073004 - 48073345
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| |||||||||| | | || || ||||| |  || || |||||||  ||||      
T  48073004 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgtcttagggatggggtaggcgatggtggtagcgggtggtttggggatcag 48073103  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||  | |  ||| | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  48073104 gtgttgaggagagttggtgatgcggttgttacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 48073203  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||  ||||||    
T  48073204 taacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtggga 48073303  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  |||||| |||||||||||||||||||    
T  48073304 ggaggagttgctagatgagtgtggggctttacttcttgatgt 48073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 204 - 354
Target Start/End: Original strand, 32353061 - 32353211
Alignment:
Q  204 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 303  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  304 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    || |||| ||||||| ||| |||  ||||||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgt 32353211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 48265548 - 48265632
Alignment:
Q  270 ggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgatgt 48265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 30970447 - 30970522
Alignment:
Q  279 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| ||||||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgt 30970522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 32352883 - 32352941
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggg 71  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| ||||||||||    
T  32352883 gttggaggttgggggccggagtgtttcatgctggtggtcggaggtgaggcgtcttaggg 32352941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 16873332 - 16873406
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||||||||||||||||   |||||||||   || |||| ||||  |||||||||||| ||||||||    
T  16873332 gtggaggtggagacgtaggttgtgggcttgggaggagattttattagaggagcttagggctttactgcttgatgt 16873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 20796235 - 20796190
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||    
T  20796235 gttggaggttgggggccggagttgttcttattggtggagggaggtg 20796190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 26721200 - 26721155
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    |||||||||| |||||||||||  ||||| ||||||||||||||||    
T  26721200 gttggaggttaggggccggagttgttcgtcttggtggagggaggtg 26721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 28358457 - 28358416
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggaggga 54  Q
    |||||||||||||||||||||||| || | ||||||||||||    
T  28358457 gttggaggttgggggccggagtgtctcatcttggtggaggga 28358416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 29140013 - 29139964
Alignment:
Q  14 ttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcg 63  Q
    ||||||| ||||||||||||||||||  |||||||| ||||| |||||||    
T  29140013 ttggaggatgggggccggagtgtttcaagttggtggcgggagttgagtcg 29139964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 39430844 - 39430799
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||    
T  39430844 gttggaggttgggggccggagttgttcttattggtggagggaggtg 39430799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 49264537 - 49264582
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||    
T  49264537 gttggaggttgggggccggagttgttcttattggtggagggaggtg 49264582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 25504839 - 25504907
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 25504907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 67 - 354
Target Start/End: Original strand, 49731559 - 49731846
Alignment:
Q  67 taggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtgg 166  Q
    ||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |||||||||    
T  49731559 taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg 49731658  T
Q  167 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 266  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  49731659 ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc 49731758  T
Q  267 agtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    || |||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  49731759 agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttgatgt 49731846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 30166917 - 30167258
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    |||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||      
T  30166917 gttggaggttgggggccgaagtatatcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcac 30167016  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  |||||||||    
T  30167017 gtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagt 30167116  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||    
T  30167117 taacagagaataagctcatgtttgtggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtggga 30167216  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||  ||||||||||||||||| ||||||||||||||||    
T  30167217 ggaggagatgttagcggagtgtaggactttacttcttgatgt 30167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 148 - 354
Target Start/End: Original strand, 2813208 - 2813414
Alignment:
Q  148 gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg 247  Q
    ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || ||||||    
T  2813208 gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg 2813307  T
Q  248 ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttc 347  Q
     | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||    
T  2813308 ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc 2813407  T
Q  348 ttgatgt 354  Q
    |||||||    
T  2813408 ttgatgt 2813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 29309975 - 29309634
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||| ||||| || ||||||  ||||||||| ||  ||||||  || || |||||||| |  || || |||||||   |||      
T  29309975 gttggaggttgggggccggagagtttcttgctggtggtcggaggtgaggcgaattagggacagggtaggtgatggtggtagcgggtggtttgagaatcag 29309876  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | | | || | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  29309875 gtgttgaggagagttggtgatggggttgacacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 29309776  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||| ||||| |||||| | ||||| |||||||||| ||||||||   |||||||||||||||||||||| |||| ||||||    
T  29309775 taacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtggga 29309676  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  ||||||||||| ||||||||||||||    
T  29309675 ggaggagttgctagatgagtgtagggcgttacttcttgatgt 29309634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 6176051 - 6176392
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| || ||||||| ||| || || ||||| |  || || |||||||  ||||      
T  6176051 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcag 6176150  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   | |||  | || ||||| | | | || | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  6176151 gtgttgatgagaatgggtgatggggttgacacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagt 6176250  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||| ||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| | || ||||||    
T  6176251 taatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtggga 6176350  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  ||||||||||||||||||||||||||    
T  6176351 ggaggagttgctagatgagtgtagggctttacttcttgatgt 6176392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 9379447 - 9379323
Alignment:
Q  230 atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 329  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  330 agtgtagggctttacttcttgatgt 354  Q
    |||||||||| ||||| ||||||||    
T  9379347 agtgtagggcattactacttgatgt 9379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 23602074 - 23601999
Alignment:
Q  279 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 23601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 25872955 - 25873022
Alignment:
Q  287 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| |||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgt 25873022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  279 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 336  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 35537334 - 35537290
Alignment:
Q  14 ttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||    
T  35537334 ttggaggttgggggccggagtgattcttattggtggagggaggtg 35537290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  306 tgtgggaggaggacttgttagcggagtgtagggctttact 345  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 14867625 - 14867699
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| |||||||| |||||||||  |||||||||||  || |||| |||||||||||| ||| | ||||||||    
T  14867625 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttaatacttgatgt 14867699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  308 tgggaggaggacttgttagcggagtgtagggctttactt 346  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 17039572 - 17039617
Alignment:
Q  12 tgttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||| ||||||||||| || | |||||||||||||||    
T  17039572 tgttggaggttggtggccggagtgtgtctttttggtggagggaggt 17039617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8130518 - 8130474
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||| ||| | |||||||| ||||||    
T  8130518 gttggaggttgggggccggagtggttctttttggtggaaggaggt 8130474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  293 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 345  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19875810 - 19875766
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    |||||||||||||||||||||||| || | |||||||| ||||||    
T  19875810 gttggaggttgggggccggagtgtatcatcttggtggaaggaggt 19875766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21740096 - 21740140
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||    
T  21740096 gttggaggttgggggccggagttgttcttcttggtggagggaggt 21740140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 46190059 - 46190015
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    |||||||||||||||||||||||||||   ||| |||||||||||    
T  46190059 gttggaggttgggggccggagtgtttctaattgatggagggaggt 46190015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 7452919 - 7452578
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| |||||| | |  |      
T  7452919 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccac 7452820  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  7452819 gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagt 7452720  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||| ||||||    
T  7452719 taacggagaataagcttatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggga 7452620  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||  || |||| |||||||||||||||||||||||||||    
T  7452619 ggaggtgttattagaggagtgtagggctttacttcttgatgt 7452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 149 - 354
Target Start/End: Original strand, 16420719 - 16420924
Alignment:
Q  149 ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt 248  Q
    |||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| ||||||     
T  16420719 ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc 16420818  T
Q  249 tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 348  Q
    | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420819 tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T
Q  349 tgatgt 354  Q
     |||||    
T  16420919 cgatgt 16420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 345  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 19384572 - 19384624
Alignment:
Q  302 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||| ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgt 19384624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  297 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 343  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37165694 - 37165736
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    |||||||||||||||||||||||||||   |||||||||||||    
T  37165694 gttggaggttgggggccggagtgtttctacttggtggagggag 37165736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 36157721 - 36157676
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||    
T  36157721 gttggaggttgggggccggagttgttcttcttggtggagggaggtg 36157676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4331757 - 4331713
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    |||||||||||||| |||||||||||| | | |||||||||||||    
T  4331757 gttggaggttggggaccggagtgtttcttctcggtggagggaggt 4331713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  295 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 343  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 17659398 - 17659354
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||    
T  17659398 gttggaggttgggggccggagttgttcttcttggtggagggaggt 17659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 45422087 - 45421745
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||      
T  45422087 gttggaggttgggggtcggagtgtgtcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcac 45421988  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    ||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  |||||||||    
T  45421987 gtggctaggagggttggtgatggttctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagt 45421888  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggctgtggg 311  Q
    |||||||||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || |||||    
T  45421887 taacagagaataagctcatgtatgtggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtggg 45421788  T
Q  312 aggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||  |||||||||||||||||||||| |||||||||||    
T  45421787 aggaggagatgttagcggagtgtagggcttttcttcttgatgt 45421745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 13550686 - 13550350
Alignment:
Q  18 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggc 117  Q
    |||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||      
T  13550686 aggttgggggccggagagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgtt 13550587  T
Q  118 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 217  Q
     ||||| ||||| ||||| ||  |||| |  |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || ||||||||||||||    
T  13550586 gaggagagttggtgatggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaaca 13550487  T
Q  218 gagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagg 317  Q
    |||||||||| ||| |  ||||| |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||||| ||||    
T  13550486 gagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgagg 13550387  T
Q  318 acttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||| ||| |||||| ||||||||| ||||||||||    
T  13550386 acttgctagaggagtgcagggctttaattcttgatgt 13550350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 26894185 - 26894522
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| || ||||||| ||| || || ||||| |  || || |||||||  ||||      
T  26894185 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcag 26894284  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | | | || | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  26894285 gtgttgaggagagttggtgatggggttgacacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 26894384  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||||||  | |||||| | ||||||| |||||||| |||||||    |||||||||||||||||||||| |||| ||||||    
T  26894385 taacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtggga 26894484  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttg 350  Q
    |||||| ||| |||  ||||||||||||||||||||||    
T  26894485 ggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 26899624 - 26899961
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| || ||||||| ||| || || ||||| |  || || |||||||  ||||      
T  26899624 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggtggtttgaggatcag 26899723  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | | | || | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  26899724 gtgttgaggagagttggtgatggggttgacacttcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 26899823  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||||||  | |||||| | ||||||| |||||||| |||||||    |||||||||||||||||||||| |||| ||||||    
T  26899824 taacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtggga 26899923  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttg 350  Q
    |||||| ||| |||  ||||||||||||||||||||||    
T  26899924 ggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 43627875 - 43627725
Alignment:
Q  204 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg 303  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  ||||||||   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  304 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    || |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 43627725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 13551139 - 13550882
Alignment:
Q  18 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggc 117  Q
    |||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||      
T  13551139 aggttgggggccggagagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgtt 13551040  T
Q  118 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 217  Q
     ||||| ||||| ||||| ||  |||| |  |||||||| ||||||||| ||||||| | |||| || ||||  | ||  || || ||||||||||||||    
T  13551039 gaggagagttggtgatggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaaca 13550940  T
Q  218 gagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggggg 275  Q
    |||||||||| ||| |  ||||| |||||| | |||||||||||||||||||||||||    
T  13550939 gagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtgggggg 13550882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 31085452 - 31085551
Alignment:
Q  255 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||| ||||||||||||| | |||||||||||||| | |||||||| | ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgt 31085551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 33548197 - 33548098
Alignment:
Q  255 ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||||| ||||||||   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt 33548098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 36804196 - 36804137
Alignment:
Q  296 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 355  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 22052911 - 22052853
Alignment:
Q  296 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||| |||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt 22052853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 36804400 - 36804352
Alignment:
Q  307 gtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc 355  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc 36804352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 33583922 - 33583966
Alignment:
Q  11 gtgttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||    
T  33583922 gtgttggaggttgggggtcggagtgtttcttcttggtggagggag 33583966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  297 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 343  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 9668579 - 9668624
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||    
T  9668579 gttggaggttgggggccggagttgttcttattggtggagggaggtg 9668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 11196918 - 11196877
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggaggga 54  Q
    ||||||||||||||||||||||||||| | ||||||| ||||    
T  11196918 gttggaggttgggggccggagtgtttcatcttggtggcggga 11196877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
Q  149 ttttggttggataggtggttaggggatgttcctttttgtgtc 190  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  26679266 ttttggttggataggtgggttggtgatgttcctttttgtgtc 26679225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 4127 - 4337
Alignment:
Q  18 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggc 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||    
T  4127 aggttgggggccggagtgtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggc 4226  T
Q  118 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 217  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  4227 tcggagggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaata 4326  T
Q  218 gagaataagtt 228  Q
    |||||||||||    
T  4327 gagaataagtt 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 26205910 - 26205574
Alignment:
Q  18 aggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggc 117  Q
    |||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || ||||||   ||||  |||      
T  26205910 aggttgggggacggagagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgtt 26205811  T
Q  118 taggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaaca 217  Q
     ||||| ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || ||||||||||||||    
T  26205810 gaggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaaca 26205711  T
Q  218 gagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggagg 317  Q
     |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||    
T  26205710 aagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagg 26205611  T
Q  318 acttgttagcggagtgtagggctttacttcttgatgt 354  Q
    | ||| ||| |||||||||||||||||||||||||||    
T  26205610 agttgctagaggagtgtagggctttacttcttgatgt 26205574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 22 - 354
Target Start/End: Complemental strand, 25318412 - 25318080
Alignment:
Q  22 tgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctagg 121  Q
    |||||| ||||| ||||| |||||||||  ||||||||||||||||||| |||| ||||||| ||| |  || || ||||||   ||||  |||   |||    
T  25318412 tgggggacggagagtttcttgttggtggtcggaggtgagtcgtcttaggtgtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgagg 25318313  T
Q  122 agggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagaga 221  Q
    || ||||| ||||  ||| |||| | ||||||||| ||||||||| || |||| | |||| || ||||  | ||  || || |||||||||||||| |||    
T  25318312 agagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaaga 25318213  T
Q  222 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 321  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||| ||    
T  25318212 ataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagtt 25318113  T
Q  322 gttagcggagtgtagggctttacttcttgatgt 354  Q
    | ||| |||||||||||||||||||||||||||    
T  25318112 gctagaggagtgtagggctttacttcttgatgt 25318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 23347040 - 23347381
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatctt 112  Q
    ||||||||||||||||||||||||||| || ||||||  ||||||||| || ||||||| ||| || || ||||| |  || ||  ||||||  ||||      
T  23347040 gttggaggttgggggccggagtgtttcttgctggtggtcggaggtgaggcgacttagggatagggtaggcgatggtggtagcgggaggtttgaggatcag 23347139  T
Q  113 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 212  Q
    |||   ||||| ||||| ||||| | | | || | ||||||||  ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||    
T  23347140 gtgttgaggagagttggtgatggggttgacacctcgttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagt 23347239  T
Q  213 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggctgtggga 312  Q
    ||||||||||||||| |||||| || || |||||| | |||||||||||||||| ||||||||   |||||||||||||||||||||| |||| ||||||    
T  23347240 taacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtggga 23347339  T
Q  313 ggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| ||| |||  ||||||||||||||||||||||||||    
T  23347340 ggaggagttgctagatgagtgtagggctttacttcttgatgt 23347381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 15674205 - 15674051
Alignment:
Q  204 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt 299  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  |||||    ||   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  300 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| |||||||||||| ||| |||  ||||| ||||||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgt 15674051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 33630378 - 33630323
Alignment:
Q  299 ttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||| || |||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgt 33630323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 1683299 - 1683266
Alignment:
Q  321 tgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||||||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttgatgt 1683266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 2923438 - 2923394
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||    
T  2923438 gttggaggttgggggacggagtgtttcttcttggtggagggaggt 2923394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 13497695 - 13497739
Alignment:
Q  11 gtgttggaggttgggggccggagtgtttcgtgttggtggagggag 55  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  13497695 gtgttggtggttgggggccggagtgtttcttgttgatggagggag 13497739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32186250 - 32186206
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  32186250 gttggaggttgggggccggagtgcttcttcttggtggagggaggt 32186206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 343  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  279 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 345  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 11060435 - 11060479
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||    
T  11060435 gttggaggttgggggccggagttgttcttcttggtggagggaggt 11060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 17078763 - 17078807
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||    
T  17078763 gttggaggttgggggccggagttgttcttcttggtggagggaggt 17078807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18051022 - 18051066
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||    
T  18051022 gttggaggttgggggccggagttgttcttcttggtggagggaggt 18051066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 19255934 - 19255866
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 19255866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19350511 - 19350467
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggt 57  Q
    |||||||||||||||||||||||| || | |||||||| ||||||    
T  19350511 gttggaggttgggggccggagtgtatcatcttggtggaaggaggt 19350467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 33640212 - 33640144
Alignment:
Q  286 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||| || || ||||||  ||||||||||||  |||||| ||||||||||||||| || ||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt 33640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 8088 - 7901
Alignment:
Q  167 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 266  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  267 agtggggggttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    ||  |||| |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt 7901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 8170 - 8101
Alignment:
Q  14 ttggaggttgggggccggagtgtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtga 84  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  8170 ttggaggttgggggccggagtgtttcgtgttggtgg-gggaggtgagtcgtattagggatagtggtggtga 8101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 8099 - 8054
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  8099 gttggaggttgggggccggagttgttcgtcttggtggagggaggtg 8054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 13033 - 12988
Alignment:
Q  13 gttggaggttgggggccggagtgtttcgtgttggtggagggaggtg 58  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  13033 gttggaggttgggggccggagttgttcgtcttggtggagggaggtg 12988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 15490 - 15564
Alignment:
Q  280 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt 354  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||  |||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttactatttgatgt 15564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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